diff --git a/content/applications/user_software/using_anaconda_package_manager.md b/content/applications/user_software/using_anaconda_package_manager.md index 6790fd9e8b4c176eb543d483146aff608a53bb78..6d67198d6dee7033fd3b3dd2c60997f7e54f6719 100644 --- a/content/applications/user_software/using_anaconda_package_manager.md +++ b/content/applications/user_software/using_anaconda_package_manager.md @@ -122,6 +122,13 @@ Our new environment is now active, and we can use it. The shell prompt will cha ### Adding and Removing Packages from an Existing Environment +{{% notice note %}} +**NOTE:** By default, conda packages are installed in the user's `home` directory. +Since Crane's `home` directories are not writeable from the worker nodes, +the commands for installing, adding and removing conda packages shown here +should be performed on the **login node**, and not as part of an interactive or SLURM job. +{{% /notice %}} + To install additional packages in an environment, use the `install` subcommand. Suppose we want to install iPython in our 'mynumpy' environment. While the environment is active, use `install `with no @@ -230,7 +237,7 @@ Jupyter Notebook. To do so, follow the steps below, replacing server. 3. Click the logout button in the top right corner. -2. Using the command-line environment, load the target conda +2. Using the command-line environment of the **login node**, load the target conda environment: {{< highlight bash >}}conda activate myenv{{< /highlight >}} diff --git a/content/applications/user_software/using_singularity.md b/content/applications/user_software/using_singularity.md index b5bb3f4e567a9b06f58d0fb506c2bfce7ec73fb0..d99505a9cfad0407895b5362f3bf8086483c974c 100644 --- a/content/applications/user_software/using_singularity.md +++ b/content/applications/user_software/using_singularity.md @@ -153,7 +153,7 @@ srun --pty --mem=4gb --qos=short --gres=gpu --partition=gpu $SHELL {{% notice info %}} The `--gres=gpu --partition=gpu` options are used here as the `tensorflow-gpu` image is GPU enabled. If you are using a non-GPU image, you may omit those options. See the page -on [submitting GPU jobs]({{< relref "/guides/submitting_jobs/submitting_cuda_or_openacc_jobs/_index.md" >}}) +on [submitting GPU jobs]({{< relref "../../submitting_jobs/submitting_gpu_jobs/" >}}) for more information. {{% /notice %}}