bowtie2_align_single.yaml 554 Bytes
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bowtie2_align_single:
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  inputs:
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    - genome_index
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    - fastq
  additional_inputs:
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    - bowtie2_genome
    - bowtie2_genome
    - bowtie2_genome
    - bowtie2_genome
    - bowtie2_genome
    - bowtie2_genome
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  outputs:
    - sam
  command: bowtie2
  arguments:
    - "-x":
        changeable: false
        required: true
        value: $inputs.0
    - "-U":
        changeable: false
        required: true
        value: $inputs.1
    - "-S":
        changeable: false
        required: true
        value: $outputs.0
  walltime: 2000
  memory: 2000