bwa_align_single.yaml 791 Bytes
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bwa_align_single:
  inputs:
    - fna
    - fastq
  outputs:
    - sai
  command: bwa
  arguments:
    - aln:
        changeable: false
        required: true
        value: false
    - "-q":
        changeable: true
        required: false
        default: 5
        value: true
    - "-l":
        changeable: true
        required: false
        default: 32
        value: true
    - "-k":
        changeable: true
        required: false
        default: 2
        value: true
    - "-t":
        changeable: true
        required: false
        default: 1
        value: true
    - "$inputs.0":
        changeable: false
        required: true
        value: false
    - "$inputs.1":
        changeable: false
        required: true
        value: false
  walltime: 2000
  memory: 2000