hiddendomains_callpeak.yaml 1.7 KB
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hiddendomains_callpeak:
  inputs:
    - name: control_bed
      type: file
      file_type: bed
    - name: signal_bed
      type: file
      file_type: bed
    - name: chrom_sizes
      type: file
      file_type: chrom_sizes
    - name: prefix
      type: string
  additional_inputs: null
  outputs:
    - name: hiddendomains_result
      type: file
      file_type: bed
    - name: enriched_bins_vis
      type: file
      file_type: bed
    - name: domains
      type: file
      file_type: txt
    - name: control_bins
      type: file
      file_type: txt
    - name: treatment_bins
      type: file
      file_type: txt
  command: hiddendomains
  arguments:
    - "-B":
        type: string 
        changeable: false
        required: true
        has_value: false
    - "-c":
        type: file
        changeable: false
        required: true
        has_value: true
        default: "$inputs.0"
    - "-t":
        type: file
        changeable: false
        required: true
        has_value: true
        default: "$inputs.1"
    - "-g":
        type: file
        changeable: false
        required: true
        has_value: true
        default: "$inputs.2"
    - "-o":
        type: file
        changeable: false
        required: true
        has_value: true
        default: "$inputs.3"
    - "-b":
        type: numeric
        changeable: true
        required: true
        has_value: true
        default: 1000
    - "-p":
        type: numeric
        changeable: true
        required: true
        has_value: true
        default: 0
    - "-q":
        type: numeric
        changeable: true
        required: true
        has_value: true
        default: 30
  walltime: 240
  memory: 16000
  cores: 1
  nodes: 1