bowtie2_align_single.yaml 520 Bytes
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bwa_align_single:
  inputs:
    -
      - fna
      - fa
    - fastq
  additional_inputs:
    - .1.bt2
    - .2.bt2
    - .3.bt2
    - .4.bt2
    - .rev.1.bt2
    - .rev.2.bt2
  outputs:
    - sam
  command: bowtie2
  arguments:
    - "-x":
        changeable: false
        required: true
        value: $inputs.0
    - "-U":
        changeable: false
        required: true
        value: $inputs.1
    - "-S":
        changeable: false
        required: true
        value: $outputs.0
  walltime: 2000
  memory: 2000