bwa_align_paired.yaml 769 Bytes
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bwa_align_paired:
  inputs:
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    -
      - fna
      - fa
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    - fastq
    - fastq
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  additional_inputs:
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    - .amb
    - .ann
    - .bwt
    - .pac
    - .sa
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  outputs:
    - sam
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  command: bwa
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  arguments:
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    - "mem":
        changeable: false
        required: true
        value: false
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    - "-M":
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        changeable: false
        required: true
        value: false
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    - "-t":
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        changeable: true
        required: false
        default: 1
        value: true
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    - "$inputs.0":
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        changeable: false
        required: true
        value: false
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    - "$inputs.1":
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        changeable: false
        required: true
        value: false
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    - "$inputs.2":
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        changeable: false
        required: true
        value: false
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  walltime: 2000
  memory: 2000