bridges_run.yaml 532 Bytes
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genomes:
  mm9:
    bowtie2: /pylon5/GROUP/USERNAME/mm9/mm9.genome.fa
    bwa: /pylon5/GROUP/USERNAME/mm9/mm9.genome.fa
    chrom.sizes: /pylon5/GROUP/USERNAME/mm9/mm9.chrom.sizes
runs:
- align: bwa
  assembly: mm9
  controls: &id001
  - ENCFF001NIM
  file_type: fastq
  idr: &id002
  - ENCFF001NIP
  - ENCFF001NIS
  peak: ccat
  peak_type: broad
  signals: &id003
  - ENCFF001NIP
  - ENCFF001NIS
- align: bowtie2
  assembly: mm9
  controls: *id001
  file_type: fastq
  idr: *id002
  peak: ccat
  peak_type: broad
  signals: *id003