bedtools_bam_to_bed.yaml

bedtools_bam_to_bed:
  inputs:
    - bam:
        type: file
  additional_inputs: null
  outputs:
    - bed:
        type: file
  command: bedtools
  arguments:
    - "bamtobed":
        changeable: false
        required: true
        has_value: false
    - "-i":
        changeable: false
        required: true
        has_value: true
        default:  $inputs.0
    - "$outputs.0":
        changeable: false
        required: true
        has_value: false
  walltime: 2000
  memory: 2000
  cores: 1