bedtools_bam_to_bed.yaml 503 Bytes
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bedtools_bam_to_bed:
  inputs:
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    - bam:
        type: file
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  additional_inputs: null
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  outputs:
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    - bed:
        type: file
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  command: bedtools
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  arguments:
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    - "bamtobed":
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        changeable: false
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        required: true
        has_value: false
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    - "-i":
        changeable: false
        required: true
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        has_value: true
        default:  $inputs.0
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    - "$outputs.0":
        changeable: false
        required: true
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        has_value: false
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  walltime: 2000
  memory: 2000
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  cores: 1