peak_call.yaml 1.55 KB
Newer Older
aknecht2's avatar
aknecht2 committed
1
2
peak_call:
  - spp[tool]:
3
    - cp_bed_tagalign:
aknecht2's avatar
aknecht2 committed
4
        inputs:
aknecht2's avatar
aknecht2 committed
5
          - exp.bed:
6
              type: file
7
8
9
10
        additional_inputs: null
        outputs:
          - exp.tagAlign:
              type: file
11
    - cp_bed_tagalign:
12
        inputs:
aknecht2's avatar
aknecht2 committed
13
          - control.bed:
14
              type: file
aknecht2's avatar
aknecht2 committed
15
        additional_inputs: null
16
17
18
19
20
21
22
23
24
25
        outputs:
          - control.tagAlign:
              type: file
    - r_spp_nodups:
        inputs:
          - exp.tagAlign:
              type: file
          - control.tagAlign:
              type: file
        additional_inputs: null
aknecht2's avatar
aknecht2 committed
26
        outputs:
27
28
29
30
31
32
          - results.narrowPeak:
              type: file
          - results.pdf:
              type: file
          - results.ccscore:
              type: file
33
    - cat_awk_sort_peaks:
aknecht2's avatar
aknecht2 committed
34
        inputs:
35
36
          - results.narrowPeak:
              type: file
aknecht2's avatar
aknecht2 committed
37
38
        additional_inputs: null
        outputs:
39
40
          - results_sorted.narrowPeak:
              type: file
aknecht2's avatar
aknecht2 committed
41
42
43
  - macs2[tool]:
    - macs2_callpeak:
        inputs:
aknecht2's avatar
aknecht2 committed
44
          - exp.bed:
45
              type: file
aknecht2's avatar
aknecht2 committed
46
          - control.bed:
47
48
49
              type: file
          - prefix:
              type: argument
aknecht2's avatar
aknecht2 committed
50
51
        additional_inputs: null
        outputs:
52
53
54
55
56
          - peaks.narrowPeak:
              type: file
          - peaks.xls:
              type: file
          - summits.bed:
57
              type: file
aknecht2's avatar
aknecht2 committed
58
59
    - sort_awk_sort_peaks:
        inputs:
60
61
          - results.narrowPeak:
              type: file
aknecht2's avatar
aknecht2 committed
62
63
        additional_inputs: null
        outputs:
64
65
          - results_sorted.narrowPeak:
              type: file