music_punctate.yaml 1.66 KB
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music_punctate:
  inputs:
    - name: prefix
      type: string

    - name: control.bed
      type: file
      file_type: bed

    - name: signal.bed
      type: file
      file_type: bed
  additional_inputs:
    - name: mapp_inputs
      type: list
      file_type: bin
  outputs:
    - name: scale_129.bed
      type: file
      file_type: bed

    - name: scale_194.bed
      type: file
      file_type: bed

    - name: scale_291.bed
      type: file
      file_type: bed

    - name: scale_437.bed
      type: file
      file_type: bed

    - name: scale_656.bed
      type: file
      file_type: bed

    - name: scale_985.bed
      type: file
      file_type: bed

    - name: scale_1477.bed
      type: file
      file_type: bed

    - name: scale_2216.bed
      type: file
      file_type: bed
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  command: MUSIC
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  arguments:
    - "--prefix":
        type: string
        changeable: false
        required: true
        has_value: true
        default: "$inputs.0"
    - "--peak_type":
        type: string
        changeable: false
        required: true
        has_value: true
        default: "punctate"
    - "--controls":
        type: file
        changeable: false
        required: true
        has_value: true
        default: "$inputs.1"
    - "--signals":
        type: file
        changeable: false
        required: true
        has_value: true
        default: "$inputs.2"
    - "--mapp":
        type: rawfolder
        changeable: true
        required: true
        has_value: true
    - "--lmapp":
        type: numeric
        changeable: true
        required: true
        has_value: true
        default: 50
  walltime: 240
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  memory: 8000
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  cores: 1
  nodes: 1