From 549b0ec2eabd7da3a78d22a6b3b4ad802bd9f04d Mon Sep 17 00:00:00 2001
From: aknecht2 <aknecht2@unl.edu>
Date: Mon, 12 Jun 2017 15:46:57 -0500
Subject: [PATCH] Fixed peak call yaml for pepr.
---
chipathlon/jobs/modules/peak_call.yaml | 11 +++++++++--
1 file changed, 9 insertions(+), 2 deletions(-)
diff --git a/chipathlon/jobs/modules/peak_call.yaml b/chipathlon/jobs/modules/peak_call.yaml
index ab8f22d..edf2e0a 100644
--- a/chipathlon/jobs/modules/peak_call.yaml
+++ b/chipathlon/jobs/modules/peak_call.yaml
@@ -369,8 +369,15 @@ peak_call:
peak_type:
param_name: peak_type
outputs:
- results_sorted.bed:
+ _PePr_peaks.bed:
param_name: result_peaks
- final_result: true
parameters.txt:
param_name: pepr_params
+ - sort_awk_sort_peaks:
+ inputs:
+ _PePr_peaks.bed:
+ param_name: result_peaks
+ outputs:
+ results_sorted.bed:
+ param_name: sorted_peaks
+ final_result: true
--
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