Commit 5fa61338 authored by aknecht2's avatar aknecht2
Browse files

Added new module files.

parent 54d82fd5
peak_call:
- spp[tool]:
- r_spp_nodups:
inputs:
- exp.bam
- control.bam
additional_inputs: null
outputs:
- dir(HMMMMM)
- results.narrowPeak
- results.pdf
- results.ccscore
- zcat_awk_sort_peaks:
inputs:
- results.narrowPeak
additional_inputs: null
outputs:
- results_sorted.narrowPeak
- macs2[tool]:
- macs2_callpeak:
inputs:
- exp.bam
- control.bam
- prefix(HMMM)
additional_inputs: null
outputs:
- results.narrowPeak
- sort_awk_sort_peaks:
inputs:
- results.narrowPeak
additional_inputs: null
outputs:
- results_sorted.narrowPeak
remove_duplicates:
- samtools_filter_bam:
inputs:
- align.bam
additional_inputs: null
outputs:
- filtered.bam
- picard_sort_sam:
inputs:
- filtered.bam
additional_input: null
outputs:
- sorted.bam
- picard_mark_duplicates:
inputs:
- sorted.bam
additional_inputs: null
outputs:
- no_dups.bam
- quality.qc
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