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Holland Computing Center
chipathlon
Commits
5fa61338
Commit
5fa61338
authored
Mar 21, 2016
by
aknecht2
Browse files
Added new module files.
parent
54d82fd5
Changes
2
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chipathlon/jobs/modules/peak_call.yaml
0 → 100644
View file @
5fa61338
peak_call
:
-
spp[tool]
:
-
r_spp_nodups
:
inputs
:
-
exp.bam
-
control.bam
additional_inputs
:
null
outputs
:
-
dir(HMMMMM)
-
results.narrowPeak
-
results.pdf
-
results.ccscore
-
zcat_awk_sort_peaks
:
inputs
:
-
results.narrowPeak
additional_inputs
:
null
outputs
:
-
results_sorted.narrowPeak
-
macs2[tool]
:
-
macs2_callpeak
:
inputs
:
-
exp.bam
-
control.bam
-
prefix(HMMM)
additional_inputs
:
null
outputs
:
-
results.narrowPeak
-
sort_awk_sort_peaks
:
inputs
:
-
results.narrowPeak
additional_inputs
:
null
outputs
:
-
results_sorted.narrowPeak
chipathlon/jobs/modules/remove_duplicates.yaml
0 → 100644
View file @
5fa61338
remove_duplicates
:
-
samtools_filter_bam
:
inputs
:
-
align.bam
additional_inputs
:
null
outputs
:
-
filtered.bam
-
picard_sort_sam
:
inputs
:
-
filtered.bam
additional_input
:
null
outputs
:
-
sorted.bam
-
picard_mark_duplicates
:
inputs
:
-
sorted.bam
additional_inputs
:
null
outputs
:
-
no_dups.bam
-
quality.qc
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