Added new module files.

chipathlon/jobs/modules/peak_call.yaml

+peak_call:
+  - spp[tool]:
+    - r_spp_nodups:
+        inputs:
+          - exp.bam
+          - control.bam
+        additional_inputs: null
+        outputs:
+          - dir(HMMMMM)
+          - results.narrowPeak
+          - results.pdf
+          - results.ccscore
+    - zcat_awk_sort_peaks:
+        inputs:
+          - results.narrowPeak
+        additional_inputs: null
+        outputs:
+          - results_sorted.narrowPeak
+  - macs2[tool]:
+    - macs2_callpeak:
+        inputs:
+          - exp.bam
+          - control.bam
+          - prefix(HMMM)
+        additional_inputs: null
+        outputs:
+          - results.narrowPeak
+    - sort_awk_sort_peaks:
+        inputs:
+          - results.narrowPeak
+        additional_inputs: null
+        outputs:
+          - results_sorted.narrowPeak

chipathlon/jobs/modules/remove_duplicates.yaml

+remove_duplicates:
+  - samtools_filter_bam:
+      inputs:
+        - align.bam
+      additional_inputs: null
+      outputs:
+        - filtered.bam
+  - picard_sort_sam:
+      inputs:
+        - filtered.bam
+      additional_input: null
+      outputs:
+        - sorted.bam
+  - picard_mark_duplicates:
+      inputs:
+        - sorted.bam
+      additional_inputs: null
+      outputs:
+        - no_dups.bam
+        - quality.qc