Commit 685e02bf authored by aknecht2's avatar aknecht2
Browse files

Fixed reference to undefined variable key in workflow_module. Adjusted param...

Fixed reference to undefined variable key in workflow_module.  Adjusted param files to use bed arguments
parent 8ca17bbf
......@@ -17,10 +17,11 @@ bedtools_bam_to_bed:
required: true
has_value: true
default: $inputs.0
- "$outputs.0":
- ">":
changeable: false
required: true
has_value: false
has_value: true
default: $outputs.0
walltime: 2000
memory: 2000
cores: 1
macs2_callpeak:
inputs:
- bam:
- bed:
type: file
- bam:
- bed:
type: file
- prefix:
type: argument
......
r_spp_nodups:
inputs:
- bam:
- bed:
type: file
- bam:
- bed:
type: file
additional_inputs: null
outputs:
......
......@@ -192,7 +192,7 @@ class WorkflowModule(object):
if job is not None:
dax.addJob(job)
else:
print "JOB ERROR for '%s'.\n" % (key,)
print "JOB ERROR for '%s'.\n" % (job_dict,)
# NOW, WE add our job to the master_list, and check dependencies
# Python ALWAYS passes by reference, so even though
# we are a little redundant here, dependency checking
......
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