Commit 8016e2d7 authored by aknecht2's avatar aknecht2
Browse files

Turns out I REALLY suck at git.

parent 3e3e925c
......@@ -170,15 +170,8 @@ class RunData(object):
self.genomes[assembly]["chr_fasta"] = []
# Load chromosome files here:
base_dir = os.path.dirname(os.path.dirname(self.data["genomes"][assembly]["chrom.sizes"] + "/"))
<<<<<<< HEAD
print "walking through base_dir: %s" % (base_dir,)
for root, dirs, files in os.walk(base_dir):
for f in files:
print "checking file %s" % (f,)
=======
for root, files, dirs in os.walk(base_dir):
for f in files:
>>>>>>> 4f7bba2f1c1c6a8ddbfebf4b165e71ddff0fb62c
if f.startswith("chr"):
self._add_file(f, root + "/" + f, "local")
self.genomes[assembly]["chr_fasta"].append(f)
......
......@@ -414,11 +414,6 @@ class WorkflowModule(object):
"type": "file"
})
param_list.append({"name": arg_params[param_name], "type": "list", "value": sub_list})
"name": arg_params[param_name],
"file": master_files[arg_params[param_name]],
"type": "file"
})
param_list.append(sub_list)
else:
param_list.append({
"name": param_name,
......
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