Commit 99df5c29 authored by Adam Caprez's avatar Adam Caprez
Browse files

Add stderr redirect to capture Bowtie2 quality info

parent ceb12636
......@@ -12,6 +12,7 @@ bowtie2_align_paired:
- bowtie2_genome
outputs:
- sam
- quality
command: bowtie2
arguments:
- "-x":
......@@ -34,5 +35,10 @@ bowtie2_align_paired:
required: true
has_value: true
default: $outputs.0
- "2>":
changeable: false
required: true
has_value: true
default: $outputs.1
walltime: 2000
memory: 2000
......@@ -11,6 +11,7 @@ bowtie2_align_single:
- bowtie2_genome
outputs:
- sam
- quality
command: bowtie2
arguments:
- "-x":
......@@ -28,5 +29,10 @@ bowtie2_align_single:
required: true
has_value: true
default: $outputs.0
- "2>":
changeable: false
required: true
has_value: true
default: $outputs.1
walltime: 2000
memory: 2000
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