Commit 9cc3add1 authored by aknecht2's avatar aknecht2
Browse files

Removed prefixing from jamm inputs, should only prefix the outputs.

parent 61f967dd
......@@ -40,8 +40,8 @@ class PeakCallGenerator(ModuleGenerator):
prefix = "%s_jamm" % (file_pair[0]["prefix"],)
inputs = {
"chrom.sizes": self.run_data.genomes[run["genome"]]["chrom.sizes"],
"exp.bed": prefix + "/sample/" + file_pair[0]["file_name"],
"control.bed": prefix + "/control/" + file_pair[1]["file_name"],
"exp.bed": file_pair[0]["file_name"],
"control.bed": file_pair[1]["file_name"],
"jamm_dir": prefix
}
additional_inputs = {}
......
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