Commit a0085119 authored by aknecht2's avatar aknecht2
Browse files

Fixed incorrect argumnets in gem & peakranger. Updated module_generator to...

Fixed incorrect argumnets in gem & peakranger.  Updated module_generator to use gfs_id for download script.
parent f61743c9
......@@ -136,8 +136,8 @@ class ModuleGenerator(object):
"name": "password",
"value": self.mdb.password
},
"id": {
"name": "id",
"gfs_id": {
"name": "gfs_id",
"value": db_result["gridfs_id"]
}
}
......
......@@ -44,7 +44,7 @@ gem_callpeak:
changeable: false
required: true
has_value: true
default: $exp.bed
default: $signal.bed
- "--ctrl":
type: file
changeable: false
......@@ -62,7 +62,7 @@ gem_callpeak:
changeable: false
required: true
has_value: true
default: "$genome"
default: $genome
- "--k_min":
type: numeric
changeable: true
......
......@@ -40,23 +40,23 @@ peakranger_callpeak:
has_value: true
default: "bed"
- "-d":
type: file
type: string
changeable: false
required: true
has_value: true
default: $prefix
default: "$prefix"
- "-c":
type: file
changeable: false
required: true
has_value: true
default: $control.bed
default: "$control.bed"
- "-o":
type: string
type: file
changeable: false
required: true
has_value: true
default: $signal.bed
default: "$signal.bed"
- "-p":
type: numeric
changeable: true
......
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