Commit c16792e0 authored by aknecht2's avatar aknecht2
Browse files

Updated config to add necessary file types for ccat.

parent 9cc3add1
......@@ -28,12 +28,13 @@ align_tools = [
"bowtie2"
]
# Current peak callign tools
# Current peak calling tools
peak_tools = [
"spp",
"macs2",
"gem",
"jamm"
"jamm",
"ccat"
]
# File extensions
......@@ -43,7 +44,7 @@ file_extensions = {
"sai": ["sai"],
"sam": ["sam"],
"bam": ["bam"],
"bed": ["bed", "narrowPeak", "broadPeak", "tagAlign", "narrowPeak.gz"],
"bed": ["bed", "peak", "region", "narrowPeak", "broadPeak", "tagAlign", "narrowPeak.gz"],
"bwa_genome": ["amb", "ann", "bwt", "pac", "sa"],
"bowtie2_genome": ["1.bt2", "2.bt2", "3.bt2", "4.bt2", "rev.1.bt2", "rev.2.bt2"],
"quality": ["quality"],
......@@ -56,7 +57,9 @@ file_extensions = {
"txt": ["txt"],
"chrom_sizes": ["sizes"],
"read_dist" : ["txt"],
"plaintext": ["txt", "md"]
"plaintext": ["txt", "md"],
"ccat_conf": ["txt", "conf"],
"log": ["log"]
}
# list of resources that can be specified per job (step) in
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment