diff --git a/chipathlon/conf.py b/chipathlon/conf.py index 4e1f30fc08766cc7f07956ce3da15b3acd0c8696..31363ea6284461cf82516a19aa6c4b930445d33b 100644 --- a/chipathlon/conf.py +++ b/chipathlon/conf.py @@ -36,7 +36,8 @@ peak_tools = [ "macs2", "gem", "peakranger", - "ccat" + "ccat", + "music" ] # Peak_type validation @@ -45,7 +46,8 @@ peak_types = { "macs2": ["narrow", "broad"], "gem": ["narrow"], "peakranger": ["narrow"], - "ccat": ["broad"] + "ccat": ["broad"], + "music": ["narrow", "punctate", "broad"] } # File extensions @@ -56,6 +58,7 @@ file_extensions = { "sam": ["sam"], "bam": ["bam"], "bed": ["bed", "peak", "region", "narrowPeak", "broadPeak", "tagAlign", "narrowPeak.gz", "broadPeak.gz"], + "bin": ["bin"], "bwa_genome": ["amb", "ann", "bwt", "pac", "sa"], "bowtie2_genome": ["1.bt2", "2.bt2", "3.bt2", "4.bt2", "rev.1.bt2", "rev.2.bt2"], "quality": ["quality"], @@ -108,7 +111,8 @@ resources = { argument_types = { "argument": ["string", "numeric"], "file": ["file", "rawfile", "stdout", "stderr"], - "list": ["list"] + "list": ["list"], + "folder": ["folder", "rawfolder"] } # Defines information about arguments