From c17b5649dfac7ad957397fcdf1ab5b0f4cad987a Mon Sep 17 00:00:00 2001
From: aknecht2 <aknecht2@unl.edu>
Date: Fri, 28 Apr 2017 13:23:16 -0500
Subject: [PATCH] Updated conf for music.
---
chipathlon/conf.py | 10 +++++++---
1 file changed, 7 insertions(+), 3 deletions(-)
diff --git a/chipathlon/conf.py b/chipathlon/conf.py
index 4e1f30f..31363ea 100644
--- a/chipathlon/conf.py
+++ b/chipathlon/conf.py
@@ -36,7 +36,8 @@ peak_tools = [
"macs2",
"gem",
"peakranger",
- "ccat"
+ "ccat",
+ "music"
]
# Peak_type validation
@@ -45,7 +46,8 @@ peak_types = {
"macs2": ["narrow", "broad"],
"gem": ["narrow"],
"peakranger": ["narrow"],
- "ccat": ["broad"]
+ "ccat": ["broad"],
+ "music": ["narrow", "punctate", "broad"]
}
# File extensions
@@ -56,6 +58,7 @@ file_extensions = {
"sam": ["sam"],
"bam": ["bam"],
"bed": ["bed", "peak", "region", "narrowPeak", "broadPeak", "tagAlign", "narrowPeak.gz", "broadPeak.gz"],
+ "bin": ["bin"],
"bwa_genome": ["amb", "ann", "bwt", "pac", "sa"],
"bowtie2_genome": ["1.bt2", "2.bt2", "3.bt2", "4.bt2", "rev.1.bt2", "rev.2.bt2"],
"quality": ["quality"],
@@ -108,7 +111,8 @@ resources = {
argument_types = {
"argument": ["string", "numeric"],
"file": ["file", "rawfile", "stdout", "stderr"],
- "list": ["list"]
+ "list": ["list"],
+ "folder": ["folder", "rawfolder"]
}
# Defines information about arguments
--
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