Commit f00b3821 authored by Adam Caprez's avatar Adam Caprez
Browse files

Fix writing to file output for bwa

parent 4275cc55
......@@ -38,5 +38,10 @@ bwa_align_paired:
changeable: false
required: true
has_value: false
- "2>":
changeable: false
required: true
has_value: true
default: $outputs.0
walltime: 2000
memory: 2000
......@@ -36,6 +36,11 @@ bwa_align_single:
required: false
has_value: true
default: 1
- "-f":
changeable: false
required: true
has_value: true
default: $outputs.0
- "$inputs.0":
changeable: false
required: true
......
......@@ -12,6 +12,11 @@ bwa_sai_to_sam:
changeable: false
required: true
has_value: false
- "-f":
changeable: false
required: true
has_value: true
default: $outputs.0
- "$inputs.0":
changeable: false
required: true
......
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