From fee211b83b8b67362493bdc6e193849c7d3e6fa6 Mon Sep 17 00:00:00 2001
From: aknecht2 <aknecht2@unl.edu>
Date: Mon, 14 Mar 2016 15:02:02 -0500
Subject: [PATCH] Added config loading.
---
chipathlon/workflow.py | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
diff --git a/chipathlon/workflow.py b/chipathlon/workflow.py
index ad84980..bc60d1f 100644
--- a/chipathlon/workflow.py
+++ b/chipathlon/workflow.py
@@ -17,7 +17,7 @@ from Pegasus.DAX3 import *
class Workflow(object):
- def __init__(self, jobhome, run_file, param_file, host, username, password):
+ def __init__(self, jobhome, run_file, param_file, config_file, host, username, password):
# Initialize db connection
self.mdb = chipathlon.db.MongoDB(host, username, password)
# Jobname info & err
@@ -27,6 +27,9 @@ class Workflow(object):
# Input file info
self.run_file = run_file
self.param_file = param_file
+ self.config_file = config_file
+ with open(self.config_file, "r") as rh:
+ self.config = yaml.load(rh)
# Dax specific info
self.dax = ADAG(self.jobname)
self.executables = {}
--
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