- 30 Aug, 2016 1 commit
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aknecht2 authored
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- 29 Aug, 2016 2 commits
- 24 Aug, 2016 1 commit
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aknecht2 authored
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- 06 Jun, 2016 4 commits
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Adam Caprez authored
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Adam Caprez authored
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Adam Caprez authored
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Adam Caprez authored
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- 01 Jun, 2016 1 commit
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Adam Caprez authored
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- 17 May, 2016 2 commits
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Adam Caprez authored
Add conf.py entry for the number of result file lines to use for each document in the bed and peak collections.
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Adam Caprez authored
Instead of one result file line per document, add them in batches to reduce the overall number of documents in the collections. Each document now contains a `result_lines` entry, which is a list of dictionaries, one result file line per list element.
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- 15 Apr, 2016 1 commit
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aknecht2 authored
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- 14 Apr, 2016 1 commit
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aknecht2 authored
Added valid_sample checking in database. Fixed db_save_results to use sample ids. Adjusted memory request usage for spp & db_save.
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- 12 Apr, 2016 1 commit
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aknecht2 authored
Added db_save_results yaml job, and script. Updated workflow information tracking to create correct meta data files for saving information to the database. Conf adjusted to support yaml files, and arbitrary result files. workflow_job can now return a dictionary of all arguments used.
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- 11 Apr, 2016 1 commit
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aknecht2 authored
Added bed & peak file saving functionality to the database class. Updated testing script to use unittests. Updated experiment_from_samples script to only print out unique values. Added list of current tools to conf.
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- 14 Mar, 2016 1 commit
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aknecht2 authored
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- 07 Mar, 2016 1 commit
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aknecht2 authored
Added genome validation. Added module loading with minor validation. Added required file detection in modules.
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- 04 Mar, 2016 2 commits
- 02 Mar, 2016 1 commit
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aknecht2 authored
Added download script. Updated job yaml. Updated module yaml. Add executable loading to workflow code. Updated database validation for new inputs.
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- 29 Feb, 2016 2 commits
- 25 Feb, 2016 1 commit
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aknecht2 authored
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- 24 Feb, 2016 1 commit
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aknecht2 authored
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