- 12 Jun, 2017 1 commit
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aknecht2 authored
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- 09 Jun, 2017 1 commit
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aknecht2 authored
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- 05 Jun, 2017 3 commits
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Natasha Pavlovikj authored
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aknecht2 authored
Updated 3 things: 1st changed pepr arguments to be a list with a separator. Updated argument parsing to allow joining list arguments with another value. Updated conf to allow separator as a valid argument option.
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Natasha Pavlovikj authored
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- 03 Jun, 2017 1 commit
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aknecht2 authored
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- 02 Jun, 2017 2 commits
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aknecht2 authored
Fixed incorrect argumnets in gem & peakranger. Updated module_generator to use gfs_id for download script.
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aknecht2 authored
Small updates to many yaml files. All peak callers now generating successfully. Adjusted file_list input loding. Fixed chip-job-ccat-format-bed to create correct number of columns.
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- 30 May, 2017 1 commit
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aknecht2 authored
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- 04 May, 2017 1 commit
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aknecht2 authored
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- 14 Feb, 2017 1 commit
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aknecht2 authored
Cleaned up peak call generator and yaml files to include default distribution arguments. Removed gene annotation argument from peakranger.
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- 10 Feb, 2017 1 commit
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aknecht2 authored
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- 29 Jan, 2017 1 commit
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aknecht2 authored
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- 18 Apr, 2016 1 commit
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aknecht2 authored
Updated all yaml files to support type argument. Heavily updated workflow_job parsing and verbosity.
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- 15 Apr, 2016 1 commit
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aknecht2 authored
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- 12 Apr, 2016 1 commit
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aknecht2 authored
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- 05 Apr, 2016 1 commit
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aknecht2 authored
Fixed reference to undefined variable key in workflow_module. Adjusted param files to use bed arguments
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- 04 Apr, 2016 1 commit
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aknecht2 authored
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- 30 Mar, 2016 1 commit
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aknecht2 authored
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- 28 Mar, 2016 1 commit
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aknecht2 authored
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- 14 Mar, 2016 1 commit
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Adam Caprez authored
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- 13 Mar, 2016 1 commit
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aknecht2 authored
Fixed minor issues in param yaml scripts. Updated workflow to add jobs and create relevant pegasus information. Workflow can now generate download and alignment jobs, still needs testing. Setup updated to include job-scripts.
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- 10 Mar, 2016 4 commits
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Adam Caprez authored
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Adam Caprez authored
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Adam Caprez authored
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Adam Caprez authored
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- 09 Mar, 2016 1 commit
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Adam Caprez authored
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