chipathlon merge requestshttps://git.unl.edu/hcc/chipathlon/-/merge_requests2017-08-03T11:06:25-05:00https://git.unl.edu/hcc/chipathlon/-/merge_requests/36Modify chip-meta-import to first try and set the genome type based on the sample2017-08-03T11:06:25-05:00Natasha PavlovikjModify chip-meta-import to first try and set the genome type based on the sampleModify chip-meta-import to first try and set the genome type based on the sample file information instead of the experimentModify chip-meta-import to first try and set the genome type based on the sample file information instead of the experimentAdam CaprezAdam Caprezhttps://git.unl.edu/hcc/chipathlon/-/merge_requests/35Add resume option to meta download script.2017-07-06T16:46:34-05:00Adam CaprezAdd resume option to meta download script.Fixes #36.
Closes #36Fixes #36.
Closes #36Adam CaprezAdam Caprezhttps://git.unl.edu/hcc/chipathlon/-/merge_requests/34Resolve "Zerone"2017-06-14T13:11:18-05:00aknecht2Resolve "Zerone"Closes #26
Woo!Closes #26
Woo!aknecht2aknecht2https://git.unl.edu/hcc/chipathlon/-/merge_requests/33Resolve "MongoDB auth should be optional"2017-06-08T14:33:53-05:00aknecht2Resolve "MongoDB auth should be optional"Closes #34Closes #34aknecht2aknecht2https://git.unl.edu/hcc/chipathlon/-/merge_requests/32Bridges compatability2017-06-08T11:12:38-05:00aknecht2Bridges compatabilityUpdates so things work on bridges as well as on local submit sites.Updates so things work on bridges as well as on local submit sites.aknecht2aknecht2https://git.unl.edu/hcc/chipathlon/-/merge_requests/31Exclude *.pyc files when loading executables.2017-05-12T11:02:39-05:00Adam CaprezExclude *.pyc files when loading executables.Closes #33Closes #33Adam CaprezAdam Caprezhttps://git.unl.edu/hcc/chipathlon/-/merge_requests/30Resolve "Setuptools fixes"2017-05-11T16:43:15-05:00Adam CaprezResolve "Setuptools fixes"Closes #32Closes #32Adam CaprezAdam Caprezhttps://git.unl.edu/hcc/chipathlon/-/merge_requests/29Resolve "Remove module load from wrappers"2017-05-11T16:23:49-05:00Adam CaprezResolve "Remove module load from wrappers"Closes #31Closes #31Adam CaprezAdam Caprezhttps://git.unl.edu/hcc/chipathlon/-/merge_requests/28Resolve "Update Default Params"2017-05-08T10:16:46-05:00aknecht2Resolve "Update Default Params"Closes #30Closes #30aknecht2aknecht2https://git.unl.edu/hcc/chipathlon/-/merge_requests/27Resolve "MUSIC peak caller"2017-05-04T12:17:54-05:00aknecht2Resolve "MUSIC peak caller"Closes #24Closes #24Peak Calling / Idraknecht2aknecht2https://git.unl.edu/hcc/chipathlon/-/merge_requests/26Resolve "Documentation In-Depth"2017-04-25T15:24:31-05:00aknecht2Resolve "Documentation In-Depth"Closes #28Closes #28https://git.unl.edu/hcc/chipathlon/-/merge_requests/25Resolve "Method Auto Doc"2017-04-13T15:21:29-05:00aknecht2Resolve "Method Auto Doc"Closes #3Closes #3Documentationaknecht2aknecht2https://git.unl.edu/hcc/chipathlon/-/merge_requests/24Sphinx Building2017-04-12T13:50:09-05:00aknecht2Sphinx BuildingInitial sphinx doc stuff created!
Closes #27Initial sphinx doc stuff created!
Closes #27Documentationaknecht2aknecht2https://git.unl.edu/hcc/chipathlon/-/merge_requests/23Script updates2017-04-05T10:53:25-05:00aknecht2Script updatesCloses #14Closes #14Input Parsingaknecht2aknecht2https://git.unl.edu/hcc/chipathlon/-/merge_requests/22Resolve "Add broad / narrow peak for available tools"2017-03-29T11:17:12-05:00aknecht2Resolve "Add broad / narrow peak for available tools"Closes #15Closes #15Peak Calling / Idraknecht2aknecht2https://git.unl.edu/hcc/chipathlon/-/merge_requests/21Resolve "IDR"2017-03-16T10:50:52-05:00aknecht2Resolve "IDR"Closes #17 & #23Closes #17 & #23Peak Calling / Idraknecht2aknecht2https://git.unl.edu/hcc/chipathlon/-/merge_requests/20Resolve "Gem output files bug"2017-03-08T19:22:43-06:00aknecht2Resolve "Gem output files bug"Closes #22Closes #22Peak Calling / Idraknecht2aknecht2https://git.unl.edu/hcc/chipathlon/-/merge_requests/19Cleaned up and added documentation for database functions.2017-03-08T10:25:57-06:00aknecht2Cleaned up and added documentation for database functions.Closes #19Closes #19https://git.unl.edu/hcc/chipathlon/-/merge_requests/18Resolve "Parse ccat / peakranger output into bed files"2017-03-07T10:48:32-06:00aknecht2Resolve "Parse ccat / peakranger output into bed files"Closes #21, #20
Fixed several workflow bugs -- everything is functioning pretty normally now! Results are getting loaded and saved correctly.Closes #21, #20
Fixed several workflow bugs -- everything is functioning pretty normally now! Results are getting loaded and saved correctly.Peak Calling / Idraknecht2aknecht2https://git.unl.edu/hcc/chipathlon/-/merge_requests/17Resolve "Run File Helper Script"2017-02-16T10:58:02-06:00aknecht2Resolve "Run File Helper Script"Closes #11
Created the script to generate a run file from a list of experiments.
Fixed a few minor bugs while testing the runs as well.Closes #11
Created the script to generate a run file from a list of experiments.
Fixed a few minor bugs while testing the runs as well.Input ParsingNatasha PavlovikjNatasha Pavlovikj