hg19-and-mm9-genome-assemblies-and-annotations.md

+hg19 assembly as of 9/2/16
+Genome sequences
+/work/ladunga/SHARED/mouse/hg19/male/male.hg19.fasta
+/work/ladunga/SHARED/human/hg19/male/male.hg19.chrom.sizes
+
+Gencode exon etc., annotations:
+/work/ladunga/SHARED/human/hg19/gencode/gencode.v19.annotation.gff3
+the same content in gtf format:
+/work/ladunga/SHARED/human/hg19/gencode/gencode.v19.annotation.gtf
+
+mm9 assembly:
+/work/ladunga/SHARED/mouse/mm9/mm9.genome.fa
+/work/ladunga/SHARED/mouse/mm9/mm9.chrom.sizes
+
+Gencode annotations:
+/work/ladunga/SHARED/mouse/mm9/gencode/gencode.vM1.annotation.gtf