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Chipathlon Notes |
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Peak Calling Tools 2016-09-09
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SPP
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MACS2
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Cexor (in R) ?
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JAMM
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GEM
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BayesPeak (in R) (Cairns, Spyrou et al. 2011)
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CCAT (Xu, Handoko et al. 2010)
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4 (6) Cell lines or cell types
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K562 cells (human) and their mouse analog, MEL
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H1-hESC embryonic stem cells (human), and E14 ES (mouse)
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Possibly, GM12878 lymphoblastoid cells (human), and their mouse analog, CH12.LX
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7 Transcription factors
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FOXA
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GABP
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MYC
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MAX
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KAT2A
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NRSF
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STAT
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5 Histone modifications
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H3K36me3
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H3K4me3
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H3K27ac
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H3K27me3
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H3K4me1 |
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