june_2014_bioinformatics_workshop.md 1.81 KB
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title = "HCC Bioinformatics Workshop, June 2013"
description = "HCC Bioinformatics Workshop, June 2013."
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Quick
link: <a href="http://go.unl.edu/hccbioinfo2014" class="external-link">http://go.unl.edu/hccbioinfo2014</a>

Thursday, June 26 \| 10am-4pm (lunch will be provided)

Filley Hall, Room 302

**Please bring your laptop.  This will be a hands-on workshop.**

### Tentative Schedule

|              |                                                         |
|--------------|---------------------------------------------------------|
| 10am-10:45am | intro to HCC, account setup                             |
| 10:45am-12pm | intro to linux, basic commands, Globus account setup    |
| 12pm-1pm     | lunch (pizza will be provided)                          |
| 1pm-1:30pm   | editing files with nano                                 |
| 1:30pm-2pm   | cluster basics (SLURM, module), hello world example job |
| 2pm-4pm      | how to run BLAST jobs                                   |

 

[Click to download PDF of
presentation.](attachments/8192150/8126518.pdf)

 

[Click to download BLAST presentation](attachments/8192150/8126522.pdf)

 

[Click to download example query
file](attachments/8192150/8126516.query)

Attachments:
------------

<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[mouse.query](attachments/8192150/8126516.query)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[HCC\_workshop.pdf](attachments/8192150/8126518.pdf) (application/pdf)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[HCC\_workshop.ppt](attachments/8192150/8126521.ppt)
(application/vnd.ms-powerpoint)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[BLAST.pdf](attachments/8192150/8126522.pdf) (application/pdf)