hcc_qiime_workshop_2016.md 3.18 KB
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title = "HCC QIIME Workshop 2016"
description = "HCC QIIME Workshop 2016."
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When:   October 20, 2016

Where:  NIC Food Innovation Campus room 277

             1901 N. 21st St., Lincoln, 68588

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[Details and Agenda](https://hcc.unl.edu/hcc-qiime-workshop)
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------------------------------------------------------------------------

Materials
---------

Slides for morning
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introduction: [QIIME\_2016\_intro.pdf](https://unl.box.com/s/d2o92uoar7x59a7rxl0f3y7o3ncy0swq)
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Software Carpentry Unix Shell
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Lessons: [http://eharstad.github.io/shell-novice/](http://eharstad.github.io/shell-novice/)
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Slides for HCC
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Overview: [2016\_Qiime.pdf](https://unl.box.com/s/4gryu7ny8lo95fs8clyu566k2ubbhtef)
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QIIME
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slides: [QIIME\_Talk\_Oct20.pdf](https://unl.box.com/s/h4zi0h27t1t16u9due3ybfrxmsdebzin)
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QIIME
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tutorial: [http://bioinformatics.unl.edu/qiime_tutorial.pdf](http://bioinformatics.unl.edu/qiime_tutorial.pdf)
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**What you need to do before Thursday October 20th**
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*Participants will need to bring a laptop with them to the workshop.* In addition, there are a few things that are required to be completed before you arrive:
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1.  To participate in this workshop, you will need to
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    [sign up for an HCC account](http://hcc.unl.edu/new-user-request)
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    (if you do not already have one). Please complete the account
    application and [DUO two-factor authentication
    setup](https://hcc-docs.unl.edu/display/HCCDOC/Setting+up+and+using+Duo)
    before Thursday. This process requires advisor approval (via email)
    and a visit to the HCC offices in the Schorr Center to activate your
    account, so it can sometimes take a day or more to complete. Please
    plan accordingly. If you still do not have your account set up by
    Thursday, please arrive at the workshop by 8:30AM to get help.
2.  Once you have your HCC account and DUO set up, please make sure that
    you are able to log into the HCC clusters (instructions for [Windows
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    Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_windows_users/)
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    and [Mac/Linux
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    Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_maclinux_users/).
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    If you have any problems logging in, please email us at
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    [hcc-support@unl.edu](mailto:hcc-support@unl.edu)
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3.  On Thursday we will be demonstrating how to transfer files using
    Globus Connect. Before arriving at the workshop, please log in to
    the
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    [Globus Web App](https://www.globus.org/app/transfer)
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    using your My.UNL credentials (choose *University of
    Nebraska-Lincoln* from the drop down menu).  Next, install the
    Globus Connect Personal app on your laptop (directions for
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    [Mac OS X](https://docs.globus.org/how-to/globus-connect-personal-mac/),
    [Linux](https://docs.globus.org/how-to/globus-connect-personal-linux/),
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    and
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    [Windows](https://docs.globus.org/how-to/globus-connect-personal-windows/)
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    so that you can begin using Globus to transfer data to and from your
    laptop.