From 0bb2c432c96afed2137d8254cf8e596cac6f3eec Mon Sep 17 00:00:00 2001
From: Mohammed Tanash <mtanash2@unl.edu>
Date: Wed, 29 Jun 2022 23:28:11 +0300
Subject: [PATCH] Modified CobraToolbox page to add gurobi and IBM cplex
instructions
---
.../running_matlab_cobratoolbox.md | 28 ++++++++++++++++---
1 file changed, 24 insertions(+), 4 deletions(-)
diff --git a/content/applications/app_specific/running_matlab_cobratoolbox.md b/content/applications/app_specific/running_matlab_cobratoolbox.md
index 71356bc7..082b2679 100644
--- a/content/applications/app_specific/running_matlab_cobratoolbox.md
+++ b/content/applications/app_specific/running_matlab_cobratoolbox.md
@@ -1,9 +1,9 @@
+++
-title = "Install and Running Matlab CobraToolbox"
-description = "How to install and run Matlab CobraToolbox"
+title = "Install and Running Matlab CobraToolbox, Gurobi, and IBM ILOG CPLEX"
+description = "How to install and run Matlab CobraToolbox, Gurobi, and IBM ILOG CPLEX"
+++
-## This document provides the steps to install and run MATLAB CobraToolbox in the cluster.
+## This document provides the steps to install and run MATLAB CobraToolbox in the cluster. Also, it provides an instructions on how to load gurobi, and IBM ILOG CPLEX.
### INSTALLATION GUIDE
After logging into the cluster, load the requierd GIT module.
@@ -30,14 +30,34 @@ Then run the following command for uploading the required modules for cobratoolb
$ git submodule update --init
{{< /highlight >}}
+
+If you need to use Gurobi then you need to load its module using the following command
+{{< highlight bash >}}
+$ gurobi/py38/9.5
+{{< /highlight >}}
+
+More versions of Gurobi are installed on the HCC resources and can be discovered used the following command
+{{< highlight bash >}}
+$ module spider gurobi
+{{< /highlight >}}
+
+
+If you need to use IBM ILOG CPLEX then you need to load its module using the following command
+{{< highlight bash >}}
+$ module load ibm-ilog-cplex
+{{< /highlight >}}
+
+
Then run Matlab using the following command
{{< highlight bash >}}
$ matlab
{{< /highlight >}}
-Finally run the following command to test CobraToolbox using the following Matlab command
+ Finally, run the following command to test CobraToolbox using the following Matlab command
```Matlab
>> initCobraToolbox
```
NOTE: you need to install CobraToolbox under your WORK directory NOT HOME directory. Because HOME directories are read-only from the compute nodes.
+
+NOTE: if you load Gurobi and IBM ILOG CPLEX modules before starting matlab and running initCobraToolbox, CobraToolbox will automatically find them and configure them for use
--
GitLab