diff --git a/content/submitting_jobs/_index.md b/content/submitting_jobs/_index.md index 08a194161b5ed62c3af83e47642e527e062e7cef..503bc8c8e2843e9b402c6c080f77d5dd7d7eeb7b 100644 --- a/content/submitting_jobs/_index.md +++ b/content/submitting_jobs/_index.md @@ -59,7 +59,7 @@ the submit file. **SLURM Submit File** {{< highlight batch >}} -#!/bin/sh +#!/bin/bash #SBATCH --time=03:15:00 # Run time in hh:mm:ss #SBATCH --mem-per-cpu=1024 # Maximum memory required per CPU (in megabytes) #SBATCH --job-name=hello-world diff --git a/content/submitting_jobs/app_specific/submitting_an_openmp_job.md b/content/submitting_jobs/app_specific/submitting_an_openmp_job.md index a49e62292515d1763d8542414069240a8ff984c3..3d83e7f9999e73a8df4caa6fa3f5e832c4ab1558 100644 --- a/content/submitting_jobs/app_specific/submitting_an_openmp_job.md +++ b/content/submitting_jobs/app_specific/submitting_an_openmp_job.md @@ -9,7 +9,7 @@ since you must request multiple cores from a single node. {{% panel theme="info" header="OpenMP example submission" %}} {{< highlight batch >}} -#!/bin/sh +#!/bin/bash #SBATCH --ntasks-per-node=16 # 16 cores #SBATCH --nodes=1 # 1 node #SBATCH --mem-per-cpu=1024 # Minimum memory required per CPU (in megabytes) diff --git a/content/submitting_jobs/app_specific/submitting_ansys_jobs.md b/content/submitting_jobs/app_specific/submitting_ansys_jobs.md index 26d0936195a6689d7b105050dcbcf67476c83487..04caef9a8907a90b2f2a9aff386e81ec90630232 100644 --- a/content/submitting_jobs/app_specific/submitting_ansys_jobs.md +++ b/content/submitting_jobs/app_specific/submitting_ansys_jobs.md @@ -19,7 +19,7 @@ For teaching purposes, users need to add {{% panel theme="info" header="ANSYS.submit" %}} {{< highlight batch >}} -#!/bin/sh +#!/bin/bash #SBATCH --ntasks=1 #SBATCH --time=00:30:00 #SBATCH --mem-per-cpu=1024 diff --git a/content/submitting_jobs/app_specific/submitting_matlab_jobs.md b/content/submitting_jobs/app_specific/submitting_matlab_jobs.md index c137f6505b4a0282f7f04baf024e66371db2292a..86b438ea68a6963a86ff69308c2b7b48d628b6d1 100644 --- a/content/submitting_jobs/app_specific/submitting_matlab_jobs.md +++ b/content/submitting_jobs/app_specific/submitting_matlab_jobs.md @@ -15,7 +15,7 @@ Specifically, these two lines should be added before calling matlab: {{% panel theme="info" header="serial_matlab.submit" %}} {{< highlight batch >}} -#!/bin/sh +#!/bin/bash #SBATCH --time=03:15:00 #SBATCH --mem-per-cpu=1024 #SBATCH --job-name=[job_name] @@ -33,7 +33,7 @@ The submit file: {{% panel theme="info" header="parallel_matlab.submit" %}} {{< highlight batch >}} -#!/bin/sh +#!/bin/bash #SBATCH --nodes=1 #SBATCH --ntasks-per-node=5 #SBATCH --time=03:15:00 diff --git a/content/submitting_jobs/app_specific/submitting_r_jobs.md b/content/submitting_jobs/app_specific/submitting_r_jobs.md index d0644b4fd2c798f5444a14c880ba2ba68d147979..db2c25ce349e452323e3d0c7eab8f60bc9eb245e 100644 --- a/content/submitting_jobs/app_specific/submitting_r_jobs.md +++ b/content/submitting_jobs/app_specific/submitting_r_jobs.md @@ -27,7 +27,7 @@ example: {{% panel theme="info" header="serial_R.submit" %}} {{< highlight batch >}} -#!/bin/sh +#!/bin/bash #SBATCH --time=00:30:00 #SBATCH --mem-per-cpu=1024 #SBATCH --job-name=TestJob @@ -47,7 +47,7 @@ directed to, as follows: {{% panel theme="info" header="serial_R.submit" %}} {{< highlight batch >}} -#!/bin/sh +#!/bin/bash #SBATCH --time=00:30:00 #SBATCH --mem-per-cpu=1024 #SBATCH --job-name=TestJob @@ -66,7 +66,7 @@ with `--args` as follows: {{% panel theme="info" header="serial_R.submit" %}} {{< highlight batch >}} -#!/bin/sh +#!/bin/bash #SBATCH --time=00:30:00 #SBATCH --mem-per-cpu=1024 #SBATCH --job-name=TestJob @@ -87,7 +87,7 @@ using `Rscript` the submit script could look like the following: {{% panel theme="info" header="serial_R.submit" %}} {{< highlight batch >}} -#!/bin/sh +#!/bin/bash #SBATCH --time=00:30:00 #SBATCH --mem-per-cpu=1024 #SBATCH --job-name=TestJob @@ -111,7 +111,7 @@ will follow the script name as in the example below: {{% panel theme="info" header="serial_R.submit" %}} {{< highlight batch >}} -#!/bin/sh +#!/bin/bash #SBATCH --time=00:30:00 #SBATCH --mem-per-cpu=1024 #SBATCH --job-name=TestJob @@ -133,7 +133,7 @@ since both are running multicore jobs on a single node. Below is an example: {{% panel theme="info" header="parallel_R.submit" %}} {{< highlight batch >}} -#!/bin/sh +#!/bin/bash #SBATCH --ntasks-per-node=16 #SBATCH --nodes=1 #SBATCH --time=00:30:00 @@ -173,7 +173,7 @@ Below is an example of running Rmpi on Crane on 2 nodes and 32 cores: {{% panel theme="info" header="Rmpi.submit" %}} {{< highlight batch >}} -#!/bin/sh +#!/bin/bash #SBATCH --nodes=2 #SBATCH --ntasks-per-node=16 #SBATCH --time=00:30:00 diff --git a/content/submitting_jobs/hcc_acknowledgment_credit.md b/content/submitting_jobs/hcc_acknowledgment_credit.md index 0ad8a0291ac59b29ae3a6aa3b72331ee1319ab15..02546109cceed60bf18c3282648d904d95d8c9c4 100644 --- a/content/submitting_jobs/hcc_acknowledgment_credit.md +++ b/content/submitting_jobs/hcc_acknowledgment_credit.md @@ -203,7 +203,7 @@ the submit file header. {{% panel theme="info" header="**Submit File Example**" %}} {{< highlight batch >}} [demo01@login.hcc_cluster ~]$ cat submit_test.slurm -#!/bin/batch +#!/bin/bash #SBATCH --ntasks=4 #SBATCH --qos=ac_demo #SBATCH --ntasks=5 diff --git a/content/submitting_jobs/submitting_a_job_array.md b/content/submitting_jobs/submitting_a_job_array.md index 5c6acfee7b0201daeef507004230cedd48d1784f..0dd681fa7f8b99877af6ee19c3ee238d50d8059a 100644 --- a/content/submitting_jobs/submitting_a_job_array.md +++ b/content/submitting_jobs/submitting_a_job_array.md @@ -16,7 +16,7 @@ in [Submitting Jobs]({{< relref "/guides/submitting_jobs/_index.md" >}}). {{% panel theme="info" header="example.slurm" %}} {{< highlight batch >}} -#!/bin/sh +#!/bin/bash #SBATCH --array=0-31 #SBATCH --time=03:15:00 # Run time in hh:mm:ss #SBATCH --mem-per-cpu=1024 # Minimum memory required per CPU (in megabytes) diff --git a/content/submitting_jobs/submitting_an_mpi_job.md b/content/submitting_jobs/submitting_an_mpi_job.md index 918a5253db706710c4e23851574e85c06f9229f9..d012be0cb044a525cfc1caa6ff5b3b977fb0dddf 100644 --- a/content/submitting_jobs/submitting_an_mpi_job.md +++ b/content/submitting_jobs/submitting_an_mpi_job.md @@ -8,7 +8,7 @@ This script requests 16 cores on nodes with InfiniBand: {{% panel theme="info" header="mpi.submit" %}} {{< highlight batch >}} -#!/bin/sh +#!/bin/bash #SBATCH --ntasks=16 #SBATCH --mem-per-cpu=1024 #SBATCH --time=03:15:00 @@ -31,7 +31,7 @@ tasks, 16 on each of two nodes: {{% panel theme="info" header="mpi.submit" %}} {{< highlight batch >}} -#!/bin/sh +#!/bin/bash #SBATCH --nodes=2 #SBATCH --ntasks-per-node=16 #SBATCH --mem-per-cpu=1024 diff --git a/content/submitting_jobs/submitting_gpu_jobs.md b/content/submitting_jobs/submitting_gpu_jobs.md index 61d479c51f9766695a9f7be51972377eda848774..ae159ba4c730d0020c052889cfc54d944f5cd037 100644 --- a/content/submitting_jobs/submitting_gpu_jobs.md +++ b/content/submitting_jobs/submitting_gpu_jobs.md @@ -103,7 +103,7 @@ CUDA and OpenACC submissions require running on GPU nodes. {{% panel theme="info" header="cuda.submit" %}} {{< highlight batch >}} -#!/bin/sh +#!/bin/bash #SBATCH --time=03:15:00 #SBATCH --mem-per-cpu=1024 #SBATCH --job-name=cuda @@ -123,7 +123,7 @@ required to compile as well). {{% panel theme="info" header="openacc.submit" %}} {{< highlight batch >}} -#!/bin/sh +#!/bin/bash #SBATCH --time=03:15:00 #SBATCH --mem-per-cpu=1024 #SBATCH --job-name=cuda-acc