diff --git a/content/applications/user_software/using_singularity.md b/content/applications/user_software/using_singularity.md index d99505a9cfad0407895b5362f3bf8086483c974c..801f3d628f03b107c4712fea0a6aa41f94d7347e 100644 --- a/content/applications/user_software/using_singularity.md +++ b/content/applications/user_software/using_singularity.md @@ -132,6 +132,11 @@ Alternatively, instead of building an image from scratch, you can start with an image as the base for your Dockerfile (i.e. `FROM unlhcc/spades`) and add any additional packages you desire. +{{% notice warning %}} +The following method only works for installing packages via `pip` that have no system-level dependencies. +If you require packages that are installed via `yum` or `apt`, you will need to create a [custom image]({{< relref "#create-a-custom-image" >}}). +{{% /notice %}} + Unfortunately it's not possible to create one image that has every available Python package installed for logistical reasons. Images are created with a small set of the most commonly-used scientific packages,