diff --git a/content/open_ondemand/cryosparc_interactive_app.md b/content/open_ondemand/cryosparc_interactive_app.md index 08413ca9139a245897d3d1fd853e28ab47c4c95c..8ea84419a9f60ed4466b7a6e2f22e97096349956 100644 --- a/content/open_ondemand/cryosparc_interactive_app.md +++ b/content/open_ondemand/cryosparc_interactive_app.md @@ -64,18 +64,18 @@ Please note that the _"master"_ process should be running while the submitted Cr #### CryoSPARC auxiliary programs -In addition to CryoSPARC, the CryoSPARC OOD App provides a few auxiliary programs, such as wrapper scripts for **Topaz** and **deepEMhancer**. +In addition to CryoSPARC, the CryoSPARC OOD App provides a few auxiliary programs, such as wrapper scripts for **Topaz** and **deepEMhancer**. The executable paths to these scripts need to be set manually on a project-level. Once this is done, the set location will apply to all future newly created jobs. -- The location of the wrapper script for Topaz is: `/usr/local/bin/topaz.sh` -- The location of the wrapper script for deepEMhancer is: `/usr/local/bin/deepemhancer.sh` -- The location of the deepEMhancer models is: `/usr/local/share/deepemhancer_models/` +* The location of the wrapper script for Topaz is: `/usr/local/bin/topaz.sh` +* The location of the wrapper script for deepEMhancer is: `/usr/local/bin/deepemhancer.sh` +* The location of the deepEMhancer models is: `/usr/local/share/deepemhancer_models/` #### CryoSPARC database The default location of the CryoSPARC database is `$WORK/cryosparc`. -- If you need to move this database elsewhere, please change the **CryoSPARC session path** using **Select Path** under the _Show advanced settings..._ checkbox. -- If you want to store the CryoSPARC session folder (database and configuration files) elsewhere, please change the **CryoSPARC session path** before you start the CryoSPARC session. +* If you need to move this database elsewhere, please change the **CryoSPARC session path** using **Select Path** under the _Show advanced settings..._ checkbox. +* If you want to store the CryoSPARC session folder (database and configuration files) elsewhere, please change the **CryoSPARC session path** before you start the CryoSPARC session. #### CryoSPARC example