From 5d0ee5021b689426315624bfe0df9423fe2e3b9d Mon Sep 17 00:00:00 2001
From: Caughlin Bohn <cbohn4@unl.edu>
Date: Thu, 4 Apr 2024 13:35:37 -0500
Subject: [PATCH] Add activation and license note for conda
---
.../using_anaconda_package_manager.md | 18 +++++++++++++++---
1 file changed, 15 insertions(+), 3 deletions(-)
diff --git a/content/applications/user_software/using_anaconda_package_manager.md b/content/applications/user_software/using_anaconda_package_manager.md
index b8ab2e7b..1349f9fc 100644
--- a/content/applications/user_software/using_anaconda_package_manager.md
+++ b/content/applications/user_software/using_anaconda_package_manager.md
@@ -18,13 +18,13 @@ straightforward.
- [Using Anaconda](#using-anaconda)
- [Searching for Packages](#searching-for-packages)
-- [Creating custom Anaconda Environments](#creating-custom-anaconda-environments)
+- [Creating Custom Anaconda Environments](#creating-custom-anaconda-environments)
- [Using /common for environments](#using-common-for-environments)
- [Adding and Removing Packages from an Existing Environment](#adding-and-removing-packages-from-an-existing-environment)
- [Moving and Recreating Existing Environment](#moving-and-recreating-existing-environment)
- [Remove Unused Anaconda Packages and Caches](#remove-unused-anaconda-packages-and-caches)
-- [Creating custom GPU Anaconda Environment](#creating-custom-gpu-anaconda-environment)
-- [Creating custom MPI Anaconda Environment](#creating-custom-mpi-anaconda-environment)
+- [Creating Custom GPU Anaconda Environment](#creating-custom-gpu-anaconda-environment)
+- [Creating Custom MPI Anaconda Environment](#creating-custom-mpi-anaconda-environment)
- [Using an Anaconda Environment in a Jupyter Notebook](#using-an-anaconda-environment-in-a-jupyter-notebook)
- [Using Mamba](#using-mamba)
@@ -252,6 +252,18 @@ conda remove -n mynumpy --all
{{< /highlight >}}
{{% /panel %}}
+The migrated environment can then be activated with:
+
+{{% panel theme="info" header="Activate new environment" %}}
+{{< highlight bash >}}
+conda activate $COMMON/mynumpy
+{{< /highlight >}}
+{{% /panel %}}
+
+**Please note** that you'll need to add the `#SBATCH --licenses=common` directive to your submit scripts
+ as described [here]({{< relref "using_the_common_file_system" >}}) in order to use environments
+in `$COMMON`.
+
### Remove Unused Anaconda Packages and Caches
By default, conda environments are installed in the user’s home directory at `~/.conda/envs`.
--
GitLab