From 72cd82ccaa353f391bf67adfa9c362bc39984479 Mon Sep 17 00:00:00 2001
From: Natasha Pavlovikj <npavlovikj2@unl.edu>
Date: Wed, 19 Jun 2019 23:04:20 +0000
Subject: [PATCH] Add table to biodata module
---
.../_index.md => biodata_module.md} | 9 +-
.../biodata_module/organisms.md | 784 ------------------
2 files changed, 6 insertions(+), 787 deletions(-)
rename content/guides/running_applications/bioinformatics_tools/{biodata_module/_index.md => biodata_module.md} (91%)
delete mode 100644 content/guides/running_applications/bioinformatics_tools/biodata_module/organisms.md
diff --git a/content/guides/running_applications/bioinformatics_tools/biodata_module/_index.md b/content/guides/running_applications/bioinformatics_tools/biodata_module.md
similarity index 91%
rename from content/guides/running_applications/bioinformatics_tools/biodata_module/_index.md
rename to content/guides/running_applications/bioinformatics_tools/biodata_module.md
index de6f22f2..7aba8652 100644
--- a/content/guides/running_applications/bioinformatics_tools/biodata_module/_index.md
+++ b/content/guides/running_applications/bioinformatics_tools/biodata_module.md
@@ -7,7 +7,7 @@ weight = "52"
HCC hosts multiple databases (BLAST, KEGG, PANTHER, InterProScan), genome files, short read aligned indices etc. on Crane.
In order to use these resources, the "**biodata**" module needs to be loaded first.
-For how to load module, please check [Module Commands](#module_commands).
+For how to load module, please check [Module Commands]({{< relref "module_commands" >}}).
Loading the "**biodata**" module will pre-set many environment variables, but most likely you will only need a subset of them. Environment variables can be used in your command or script by prefixing `$` to the name.
@@ -79,5 +79,8 @@ cp /scratch/blast_nucleotide.results .
{{% /panel %}}
-The organisms and their appropriate environmental variables for all genomes and chromosome files, as well as for short read aligned indices are shown on the link below:
-[Organisms]({{<relref "organisms" >}})
+### Available Organisms
+
+The organisms and their appropriate environmental variables for all genomes and chromosome files, as well as indices are shown in the table below.
+
+{{< table url="http://rhino-head.unl.edu:8192/bio/data/json" >}}
diff --git a/content/guides/running_applications/bioinformatics_tools/biodata_module/organisms.md b/content/guides/running_applications/bioinformatics_tools/biodata_module/organisms.md
deleted file mode 100644
index 1f37c00f..00000000
--- a/content/guides/running_applications/bioinformatics_tools/biodata_module/organisms.md
+++ /dev/null
@@ -1,784 +0,0 @@
-1. [HCC-DOCS](index.html)
-2. [HCC-DOCS Home](HCC-DOCS-Home_327685.html)
-3. [HCC Documentation](HCC-Documentation_332651.html)
-4. [Running Applications](Running-Applications_7471153.html)
-5. [Bioinformatics Tools](Bioinformatics-Tools_8193279.html)
-6. [Biodata Module](Biodata-Module_15171887.html)
-
-<span id="title-text"> HCC-DOCS : Organisms </span>
-===================================================
-
-Created by <span class="author"> Adam Caprez</span> on Mar 10, 2016
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Arabidopsis\_thaliana</span>
-
-| Short Name | Source | Build | Type |
-|----------------------------------------------|--------|--------|----------------------------|
-| ARABIDOPSIS\_THALIANA\_NCBI\_TAIR10 | NCBI | TAIR10 | Main Directory |
-| ATH | NCBI | TAIR10 | Main Directory |
-| BOWTIE\_ARABIDOPSIS\_THALIANA\_NCBI\_TAIR10 | NCBI | TAIR10 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_ATH | NCBI | TAIR10 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_ARABIDOPSIS\_THALIANA\_NCBI\_TAIR10 | NCBI | TAIR10 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_ATH | NCBI | TAIR10 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_ARABIDOPSIS\_THALIANA\_NCBI\_TAIR10 | NCBI | TAIR10 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_ATH | NCBI | TAIR10 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_ARABIDOPSIS\_THALIANA\_NCBI\_TAIR10 | NCBI | TAIR10 | Chromosome Fasta Files |
-| CHR\_ATH | NCBI | TAIR10 | Chromosome Fasta Files |
-| FAIDX\_ARABIDOPSIS\_THALIANA\_NCBI\_TAIR10 | NCBI | TAIR10 | Fasta Index .fai File |
-| FAIDX\_ATH | NCBI | TAIR10 | Fasta Index .fai File |
-| GENOME\_ARABIDOPSIS\_THALIANA\_NCBI\_TAIR10 | NCBI | TAIR10 | Genome Fasta File |
-| GENOME\_ATH | NCBI | TAIR10 | Genome Fasta File |
-| PICARD\_ARABIDOPSIS\_THALIANA\_NCBI\_TAIR10 | NCBI | TAIR10 | Picard .dict File |
-| PICARD\_ATH | NCBI | TAIR10 | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Bacillus\_cereus\_ATCC\_10987</span>
-
-| Short Name | Source | Build | Type |
-|------------------------------------------------------------|--------|------------|----------------------------|
-| BACILLUS\_CEREUS\_ATCC\_10987 | NCBI | 2004-02-13 | Main Directory |
-| BACILLUS\_CEREUS\_ATCC\_10987\_NCBI\_2004\_02\_13 | NCBI | 2004-02-13 | Main Directory |
-| BOWTIE\_BACILLUS\_CEREUS\_ATCC\_10987 | NCBI | 2004-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_BACILLUS\_CEREUS\_ATCC\_10987\_NCBI\_2004\_02\_13 | NCBI | 2004-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_BACILLUS\_CEREUS\_ATCC\_10987 | NCBI | 2004-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_BACILLUS\_CEREUS\_ATCC\_10987\_NCBI\_2004\_02\_13 | NCBI | 2004-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_BACILLUS\_CEREUS\_ATCC\_10987 | NCBI | 2004-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_BACILLUS\_CEREUS\_ATCC\_10987\_NCBI\_2004\_02\_13 | NCBI | 2004-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_BACILLUS\_CEREUS\_ATCC\_10987 | NCBI | 2004-02-13 | Chromosome Fasta Files |
-| CHR\_BACILLUS\_CEREUS\_ATCC\_10987\_NCBI\_2004\_02\_13 | NCBI | 2004-02-13 | Chromosome Fasta Files |
-| FAIDX\_BACILLUS\_CEREUS\_ATCC\_10987 | NCBI | 2004-02-13 | Fasta Index .fai File |
-| FAIDX\_BACILLUS\_CEREUS\_ATCC\_10987\_NCBI\_2004\_02\_13 | NCBI | 2004-02-13 | Fasta Index .fai File |
-| GENOME\_BACILLUS\_CEREUS\_ATCC\_10987 | NCBI | 2004-02-13 | Genome Fasta File |
-| GENOME\_BACILLUS\_CEREUS\_ATCC\_10987\_NCBI\_2004\_02\_13 | NCBI | 2004-02-13 | Genome Fasta File |
-| PICARD\_BACILLUS\_CEREUS\_ATCC\_10987 | NCBI | 2004-02-13 | Picard .dict File |
-| PICARD\_BACILLUS\_CEREUS\_ATCC\_10987\_NCBI\_2004\_02\_13 | NCBI | 2004-02-13 | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Bacillus\_subtilis\_168</span>
-
-| Short Name | Source | Build | Type |
-|------------------------------------------------|---------|-------|----------------------------|
-| BACILLUS\_SUBTILIS\_168\_ENSEMBL\_EB2 | Ensembl | EB2 | Main Directory |
-| BOWTIE\_BACILLUS\_SUBTILIS\_168\_ENSEMBL\_EB2 | Ensembl | EB2 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_BSUBT\_168 | Ensembl | EB2 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_BACILLUS\_SUBTILIS\_168\_ENSEMBL\_EB2 | Ensembl | EB2 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_BSUBT\_168 | Ensembl | EB2 | Bwa\|Bowtie\|Bowtie2 Index |
-| BSUBT\_168 | Ensembl | EB2 | Main Directory |
-| BWA\_BACILLUS\_SUBTILIS\_168\_ENSEMBL\_EB2 | Ensembl | EB2 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_BSUBT\_168 | Ensembl | EB2 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_BACILLUS\_SUBTILIS\_168\_ENSEMBL\_EB2 | Ensembl | EB2 | Chromosome Fasta Files |
-| CHR\_BSUBT\_168 | Ensembl | EB2 | Chromosome Fasta Files |
-| FAIDX\_BACILLUS\_SUBTILIS\_168\_ENSEMBL\_EB2 | Ensembl | EB2 | Fasta Index .fai File |
-| FAIDX\_BSUBT\_168 | Ensembl | EB2 | Fasta Index .fai File |
-| GENOME\_BACILLUS\_SUBTILIS\_168\_ENSEMBL\_EB2 | Ensembl | EB2 | Genome Fasta File |
-| GENOME\_BSUBT\_168 | Ensembl | EB2 | Genome Fasta File |
-| PICARD\_BACILLUS\_SUBTILIS\_168\_ENSEMBL\_EB2 | Ensembl | EB2 | Picard .dict File |
-| PICARD\_BSUBT\_168 | Ensembl | EB2 | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Bos\_taurus</span>
-
-| Short Name | Source | Build | Type |
-|------------------------------------------|---------|------------|----------------------------|
-| BOS\_TAURUS\_ENSEMBL\_UMD\_3\_1 | Ensembl | UMD\_3.1 | Main Directory |
-| BOS\_TAURUS\_ENSEMBL\_UMD3\_1 | Ensembl | UMD3.1 | Main Directory |
-| BOS\_TAURUS\_NCBI\_UMD\_3\_1 | NCBI | UMD\_3.1 | Main Directory |
-| BOS\_TAURUS\_NCBI\_UMD\_3\_1\_1 | NCBI | UMD\_3.1.1 | Main Directory |
-| BOWTIE\_BOS\_TAURUS\_ENSEMBL\_UMD\_3\_1 | Ensembl | UMD\_3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_BOS\_TAURUS\_ENSEMBL\_UMD3\_1 | Ensembl | UMD3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_BOS\_TAURUS\_NCBI\_UMD\_3\_1 | NCBI | UMD\_3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_BOS\_TAURUS\_NCBI\_UMD\_3\_1\_1 | NCBI | UMD\_3.1.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_COW | NCBI | UMD\_3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_BOS\_TAURUS\_ENSEMBL\_UMD\_3\_1 | Ensembl | UMD\_3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_BOS\_TAURUS\_ENSEMBL\_UMD3\_1 | Ensembl | UMD3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_BOS\_TAURUS\_NCBI\_UMD\_3\_1 | NCBI | UMD\_3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_BOS\_TAURUS\_NCBI\_UMD\_3\_1\_1 | NCBI | UMD\_3.1.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_COW | NCBI | UMD\_3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_BOS\_TAURUS\_ENSEMBL\_UMD\_3\_1 | Ensembl | UMD\_3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_BOS\_TAURUS\_ENSEMBL\_UMD3\_1 | Ensembl | UMD3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_BOS\_TAURUS\_NCBI\_UMD\_3\_1 | NCBI | UMD\_3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_BOS\_TAURUS\_NCBI\_UMD\_3\_1\_1 | NCBI | UMD\_3.1.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_COW | NCBI | UMD\_3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_BOS\_TAURUS\_ENSEMBL\_UMD\_3\_1 | Ensembl | UMD\_3.1 | Chromosome Fasta Files |
-| CHR\_BOS\_TAURUS\_ENSEMBL\_UMD3\_1 | Ensembl | UMD3.1 | Chromosome Fasta Files |
-| CHR\_BOS\_TAURUS\_NCBI\_UMD\_3\_1 | NCBI | UMD\_3.1 | Chromosome Fasta Files |
-| CHR\_BOS\_TAURUS\_NCBI\_UMD\_3\_1\_1 | NCBI | UMD\_3.1.1 | Chromosome Fasta Files |
-| CHR\_COW | NCBI | UMD\_3.1 | Chromosome Fasta Files |
-| COW | NCBI | UMD\_3.1 | Main Directory |
-| FAIDX\_BOS\_TAURUS\_ENSEMBL\_UMD\_3\_1 | Ensembl | UMD\_3.1 | Fasta Index .fai File |
-| FAIDX\_BOS\_TAURUS\_ENSEMBL\_UMD3\_1 | Ensembl | UMD3.1 | Fasta Index .fai File |
-| FAIDX\_BOS\_TAURUS\_NCBI\_UMD\_3\_1 | NCBI | UMD\_3.1 | Fasta Index .fai File |
-| FAIDX\_BOS\_TAURUS\_NCBI\_UMD\_3\_1\_1 | NCBI | UMD\_3.1.1 | Fasta Index .fai File |
-| FAIDX\_COW | NCBI | UMD\_3.1 | Fasta Index .fai File |
-| GENOME\_BOS\_TAURUS\_ENSEMBL\_UMD\_3\_1 | Ensembl | UMD\_3.1 | Genome Fasta File |
-| GENOME\_BOS\_TAURUS\_ENSEMBL\_UMD3\_1 | Ensembl | UMD3.1 | Genome Fasta File |
-| GENOME\_BOS\_TAURUS\_NCBI\_UMD\_3\_1 | NCBI | UMD\_3.1 | Genome Fasta File |
-| GENOME\_BOS\_TAURUS\_NCBI\_UMD\_3\_1\_1 | NCBI | UMD\_3.1.1 | Genome Fasta File |
-| GENOME\_COW | NCBI | UMD\_3.1 | Genome Fasta File |
-| PICARD\_BOS\_TAURUS\_ENSEMBL\_UMD\_3\_1 | Ensembl | UMD\_3.1 | Picard .dict File |
-| PICARD\_BOS\_TAURUS\_ENSEMBL\_UMD3\_1 | Ensembl | UMD3.1 | Picard .dict File |
-| PICARD\_BOS\_TAURUS\_NCBI\_UMD\_3\_1 | NCBI | UMD\_3.1 | Picard .dict File |
-| PICARD\_BOS\_TAURUS\_NCBI\_UMD\_3\_1\_1 | NCBI | UMD\_3.1.1 | Picard .dict File |
-| PICARD\_COW | NCBI | UMD\_3.1 | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Caenorhabditis\_elegans</span>
-
-| Short Name | Source | Build | Type |
-|-----------------------------------------------|--------|-------|----------------------------|
-| BOWTIE\_CAENORHABDITIS\_ELEGANS\_NCBI\_WS195 | NCBI | WS195 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_CELEGANS | NCBI | WS195 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_CAENORHABDITIS\_ELEGANS\_NCBI\_WS195 | NCBI | WS195 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_CELEGANS | NCBI | WS195 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_CAENORHABDITIS\_ELEGANS\_NCBI\_WS195 | NCBI | WS195 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_CELEGANS | NCBI | WS195 | Bwa\|Bowtie\|Bowtie2 Index |
-| CAENORHABDITIS\_ELEGANS\_NCBI\_WS195 | NCBI | WS195 | Main Directory |
-| CELEGANS | NCBI | WS195 | Main Directory |
-| CHR\_CAENORHABDITIS\_ELEGANS\_NCBI\_WS195 | NCBI | WS195 | Chromosome Fasta Files |
-| CHR\_CELEGANS | NCBI | WS195 | Chromosome Fasta Files |
-| FAIDX\_CAENORHABDITIS\_ELEGANS\_NCBI\_WS195 | NCBI | WS195 | Fasta Index .fai File |
-| FAIDX\_CELEGANS | NCBI | WS195 | Fasta Index .fai File |
-| GENOME\_CAENORHABDITIS\_ELEGANS\_NCBI\_WS195 | NCBI | WS195 | Genome Fasta File |
-| GENOME\_CELEGANS | NCBI | WS195 | Genome Fasta File |
-| PICARD\_CAENORHABDITIS\_ELEGANS\_NCBI\_WS195 | NCBI | WS195 | Picard .dict File |
-| PICARD\_CELEGANS | NCBI | WS195 | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Canis\_familiaris</span>
-
-| Short Name | Source | Build | Type |
-|---------------------------------------------|--------|----------|----------------------------|
-| BOWTIE\_CANIS\_FAMILIARIS\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_DOG | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_CANIS\_FAMILIARIS\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_DOG | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_CANIS\_FAMILIARIS\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_DOG | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| CANIS\_FAMILIARIS\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Main Directory |
-| CHR\_CANIS\_FAMILIARIS\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Chromosome Fasta Files |
-| CHR\_DOG | NCBI | build3.1 | Chromosome Fasta Files |
-| DOG | NCBI | build3.1 | Main Directory |
-| FAIDX\_CANIS\_FAMILIARIS\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Fasta Index .fai File |
-| FAIDX\_DOG | NCBI | build3.1 | Fasta Index .fai File |
-| GENOME\_CANIS\_FAMILIARIS\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Genome Fasta File |
-| GENOME\_DOG | NCBI | build3.1 | Genome Fasta File |
-| PICARD\_CANIS\_FAMILIARIS\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Picard .dict File |
-| PICARD\_DOG | NCBI | build3.1 | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Danio\_rerio</span>
-
-| Short Name | Source | Build | Type |
-|----------------------------------|--------|-------|----------------------------|
-| BOWTIE\_DANIO\_RERIO | NCBI | Zv9 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_DANIO\_RERIO\_NCBI\_ZV9 | NCBI | Zv9 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_DANIO\_RERIO | NCBI | Zv9 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_DANIO\_RERIO\_NCBI\_ZV9 | NCBI | Zv9 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_DANIO\_RERIO | NCBI | Zv9 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_DANIO\_RERIO\_NCBI\_ZV9 | NCBI | Zv9 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_DANIO\_RERIO | NCBI | Zv9 | Chromosome Fasta Files |
-| CHR\_DANIO\_RERIO\_NCBI\_ZV9 | NCBI | Zv9 | Chromosome Fasta Files |
-| DANIO\_RERIO | NCBI | Zv9 | Main Directory |
-| DANIO\_RERIO\_NCBI\_ZV9 | NCBI | Zv9 | Main Directory |
-| FAIDX\_DANIO\_RERIO | NCBI | Zv9 | Fasta Index .fai File |
-| FAIDX\_DANIO\_RERIO\_NCBI\_ZV9 | NCBI | Zv9 | Fasta Index .fai File |
-| GENOME\_DANIO\_RERIO | NCBI | Zv9 | Genome Fasta File |
-| GENOME\_DANIO\_RERIO\_NCBI\_ZV9 | NCBI | Zv9 | Genome Fasta File |
-| PICARD\_DANIO\_RERIO | NCBI | Zv9 | Picard .dict File |
-| PICARD\_DANIO\_RERIO\_NCBI\_ZV9 | NCBI | Zv9 | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Drosophila\_melanogaster</span>
-
-| Short Name | Source | Build | Type |
-|-----------------------------------------------------|--------|-----------|----------------------------|
-| BOWTIE\_DROSOPHILA\_MELANOGASTER | NCBI | build5.41 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_DROSOPHILA\_MELANOGASTER\_NCBI\_BUILD5\_41 | NCBI | build5.41 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_DROSOPHILA\_MELANOGASTER | NCBI | build5.41 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_DROSOPHILA\_MELANOGASTER\_NCBI\_BUILD5\_41 | NCBI | build5.41 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_DROSOPHILA\_MELANOGASTER | NCBI | build5.41 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_DROSOPHILA\_MELANOGASTER\_NCBI\_BUILD5\_41 | NCBI | build5.41 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_DROSOPHILA\_MELANOGASTER | NCBI | build5.41 | Chromosome Fasta Files |
-| CHR\_DROSOPHILA\_MELANOGASTER\_NCBI\_BUILD5\_41 | NCBI | build5.41 | Chromosome Fasta Files |
-| DROSOPHILA\_MELANOGASTER | NCBI | build5.41 | Main Directory |
-| DROSOPHILA\_MELANOGASTER\_NCBI\_BUILD5\_41 | NCBI | build5.41 | Main Directory |
-| FAIDX\_DROSOPHILA\_MELANOGASTER | NCBI | build5.41 | Fasta Index .fai File |
-| FAIDX\_DROSOPHILA\_MELANOGASTER\_NCBI\_BUILD5\_41 | NCBI | build5.41 | Fasta Index .fai File |
-| GENOME\_DROSOPHILA\_MELANOGASTER | NCBI | build5.41 | Genome Fasta File |
-| GENOME\_DROSOPHILA\_MELANOGASTER\_NCBI\_BUILD5\_41 | NCBI | build5.41 | Genome Fasta File |
-| PICARD\_DROSOPHILA\_MELANOGASTER | NCBI | build5.41 | Picard .dict File |
-| PICARD\_DROSOPHILA\_MELANOGASTER\_NCBI\_BUILD5\_41 | NCBI | build5.41 | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Enterobacteriophage\_lambda</span>
-
-| Short Name | Source | Build | Type |
-|----------------------------------------------------------|--------|------------|----------------------------|
-| BOWTIE\_ELAMBDA | NCBI | 1993-04-28 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_ENTEROBACTERIOPHAGE\_LAMBDA\_NCBI\_1993\_04\_28 | NCBI | 1993-04-28 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_ELAMBDA | NCBI | 1993-04-28 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_ENTEROBACTERIOPHAGE\_LAMBDA\_NCBI\_1993\_04\_28 | NCBI | 1993-04-28 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_ELAMBDA | NCBI | 1993-04-28 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_ENTEROBACTERIOPHAGE\_LAMBDA\_NCBI\_1993\_04\_28 | NCBI | 1993-04-28 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_ELAMBDA | NCBI | 1993-04-28 | Chromosome Fasta Files |
-| CHR\_ENTEROBACTERIOPHAGE\_LAMBDA\_NCBI\_1993\_04\_28 | NCBI | 1993-04-28 | Chromosome Fasta Files |
-| ELAMBDA | NCBI | 1993-04-28 | Main Directory |
-| ENTEROBACTERIOPHAGE\_LAMBDA\_NCBI\_1993\_04\_28 | NCBI | 1993-04-28 | Main Directory |
-| FAIDX\_ELAMBDA | NCBI | 1993-04-28 | Fasta Index .fai File |
-| FAIDX\_ENTEROBACTERIOPHAGE\_LAMBDA\_NCBI\_1993\_04\_28 | NCBI | 1993-04-28 | Fasta Index .fai File |
-| GENOME\_ELAMBDA | NCBI | 1993-04-28 | Genome Fasta File |
-| GENOME\_ENTEROBACTERIOPHAGE\_LAMBDA\_NCBI\_1993\_04\_28 | NCBI | 1993-04-28 | Genome Fasta File |
-| PICARD\_ELAMBDA | NCBI | 1993-04-28 | Picard .dict File |
-| PICARD\_ENTEROBACTERIOPHAGE\_LAMBDA\_NCBI\_1993\_04\_28 | NCBI | 1993-04-28 | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Equus\_caballus</span>
-
-| Short Name | Source | Build | Type |
-|--------------------------------------------|--------|-----------|----------------------------|
-| BOWTIE\_EQUUS\_CABALLUS\_NCBI\_EQUCAB2\_0 | NCBI | EquCab2.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_HORSE | NCBI | EquCab2.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_EQUUS\_CABALLUS\_NCBI\_EQUCAB2\_0 | NCBI | EquCab2.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_HORSE | NCBI | EquCab2.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_EQUUS\_CABALLUS\_NCBI\_EQUCAB2\_0 | NCBI | EquCab2.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_HORSE | NCBI | EquCab2.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_EQUUS\_CABALLUS\_NCBI\_EQUCAB2\_0 | NCBI | EquCab2.0 | Chromosome Fasta Files |
-| CHR\_HORSE | NCBI | EquCab2.0 | Chromosome Fasta Files |
-| EQUUS\_CABALLUS\_NCBI\_EQUCAB2\_0 | NCBI | EquCab2.0 | Main Directory |
-| FAIDX\_EQUUS\_CABALLUS\_NCBI\_EQUCAB2\_0 | NCBI | EquCab2.0 | Fasta Index .fai File |
-| FAIDX\_HORSE | NCBI | EquCab2.0 | Fasta Index .fai File |
-| GENOME\_EQUUS\_CABALLUS\_NCBI\_EQUCAB2\_0 | NCBI | EquCab2.0 | Genome Fasta File |
-| GENOME\_HORSE | NCBI | EquCab2.0 | Genome Fasta File |
-| HORSE | NCBI | EquCab2.0 | Main Directory |
-| PICARD\_EQUUS\_CABALLUS\_NCBI\_EQUCAB2\_0 | NCBI | EquCab2.0 | Picard .dict File |
-| PICARD\_HORSE | NCBI | EquCab2.0 | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Escherichia\_coli\_K\_12\_DH10B</span>
-
-| Short Name | Source | Build | Type |
-|--------------------------------------------------------------|--------|------------|----------------------------|
-| BOWTIE\_ESCHERICHIA\_COLI\_K\_12\_DH10B | NCBI | 2008-03-17 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_ESCHERICHIA\_COLI\_K\_12\_DH10B\_NCBI\_2008\_03\_17 | NCBI | 2008-03-17 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_ESCHERICHIA\_COLI\_K\_12\_DH10B | NCBI | 2008-03-17 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_ESCHERICHIA\_COLI\_K\_12\_DH10B\_NCBI\_2008\_03\_17 | NCBI | 2008-03-17 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_ESCHERICHIA\_COLI\_K\_12\_DH10B | NCBI | 2008-03-17 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_ESCHERICHIA\_COLI\_K\_12\_DH10B\_NCBI\_2008\_03\_17 | NCBI | 2008-03-17 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_ESCHERICHIA\_COLI\_K\_12\_DH10B | NCBI | 2008-03-17 | Chromosome Fasta Files |
-| CHR\_ESCHERICHIA\_COLI\_K\_12\_DH10B\_NCBI\_2008\_03\_17 | NCBI | 2008-03-17 | Chromosome Fasta Files |
-| ESCHERICHIA\_COLI\_K\_12\_DH10B | NCBI | 2008-03-17 | Main Directory |
-| ESCHERICHIA\_COLI\_K\_12\_DH10B\_NCBI\_2008\_03\_17 | NCBI | 2008-03-17 | Main Directory |
-| FAIDX\_ESCHERICHIA\_COLI\_K\_12\_DH10B | NCBI | 2008-03-17 | Fasta Index .fai File |
-| FAIDX\_ESCHERICHIA\_COLI\_K\_12\_DH10B\_NCBI\_2008\_03\_17 | NCBI | 2008-03-17 | Fasta Index .fai File |
-| GENOME\_ESCHERICHIA\_COLI\_K\_12\_DH10B | NCBI | 2008-03-17 | Genome Fasta File |
-| GENOME\_ESCHERICHIA\_COLI\_K\_12\_DH10B\_NCBI\_2008\_03\_17 | NCBI | 2008-03-17 | Genome Fasta File |
-| PICARD\_ESCHERICHIA\_COLI\_K\_12\_DH10B | NCBI | 2008-03-17 | Picard .dict File |
-| PICARD\_ESCHERICHIA\_COLI\_K\_12\_DH10B\_NCBI\_2008\_03\_17 | NCBI | 2008-03-17 | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Escherichia\_coli\_K\_12\_MG1655</span>
-
-| Short Name | Source | Build | Type |
-|---------------------------------------------------------------|--------|------------|----------------------------|
-| BOWTIE\_ESCHERICHIA\_COLI\_K\_12\_MG1655 | NCBI | 2001-10-15 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_ESCHERICHIA\_COLI\_K\_12\_MG1655\_NCBI\_2001\_10\_15 | NCBI | 2001-10-15 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_ESCHERICHIA\_COLI\_K\_12\_MG1655 | NCBI | 2001-10-15 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_ESCHERICHIA\_COLI\_K\_12\_MG1655\_NCBI\_2001\_10\_15 | NCBI | 2001-10-15 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_ESCHERICHIA\_COLI\_K\_12\_MG1655 | NCBI | 2001-10-15 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_ESCHERICHIA\_COLI\_K\_12\_MG1655\_NCBI\_2001\_10\_15 | NCBI | 2001-10-15 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_ESCHERICHIA\_COLI\_K\_12\_MG1655 | NCBI | 2001-10-15 | Chromosome Fasta Files |
-| CHR\_ESCHERICHIA\_COLI\_K\_12\_MG1655\_NCBI\_2001\_10\_15 | NCBI | 2001-10-15 | Chromosome Fasta Files |
-| ESCHERICHIA\_COLI\_K\_12\_MG1655 | NCBI | 2001-10-15 | Main Directory |
-| ESCHERICHIA\_COLI\_K\_12\_MG1655\_NCBI\_2001\_10\_15 | NCBI | 2001-10-15 | Main Directory |
-| FAIDX\_ESCHERICHIA\_COLI\_K\_12\_MG1655 | NCBI | 2001-10-15 | Fasta Index .fai File |
-| FAIDX\_ESCHERICHIA\_COLI\_K\_12\_MG1655\_NCBI\_2001\_10\_15 | NCBI | 2001-10-15 | Fasta Index .fai File |
-| GENOME\_ESCHERICHIA\_COLI\_K\_12\_MG1655 | NCBI | 2001-10-15 | Genome Fasta File |
-| GENOME\_ESCHERICHIA\_COLI\_K\_12\_MG1655\_NCBI\_2001\_10\_15 | NCBI | 2001-10-15 | Genome Fasta File |
-| PICARD\_ESCHERICHIA\_COLI\_K\_12\_MG1655 | NCBI | 2001-10-15 | Picard .dict File |
-| PICARD\_ESCHERICHIA\_COLI\_K\_12\_MG1655\_NCBI\_2001\_10\_15 | NCBI | 2001-10-15 | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Gallus\_gallus</span>
-
-| Short Name | Source | Build | Type |
-|------------------------------------------|--------|----------|----------------------------|
-| BOWTIE\_GALLUS\_GALLUS | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_GALLUS\_GALLUS\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_GALLUS\_GALLUS | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_GALLUS\_GALLUS\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_GALLUS\_GALLUS | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_GALLUS\_GALLUS\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_GALLUS\_GALLUS | NCBI | build3.1 | Chromosome Fasta Files |
-| CHR\_GALLUS\_GALLUS\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Chromosome Fasta Files |
-| FAIDX\_GALLUS\_GALLUS | NCBI | build3.1 | Fasta Index .fai File |
-| FAIDX\_GALLUS\_GALLUS\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Fasta Index .fai File |
-| GALLUS\_GALLUS | NCBI | build3.1 | Main Directory |
-| GALLUS\_GALLUS\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Main Directory |
-| GENOME\_GALLUS\_GALLUS | NCBI | build3.1 | Genome Fasta File |
-| GENOME\_GALLUS\_GALLUS\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Genome Fasta File |
-| PICARD\_GALLUS\_GALLUS | NCBI | build3.1 | Picard .dict File |
-| PICARD\_GALLUS\_GALLUS\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Glycine\_max</span>
-
-| Short Name | Source | Build | Type |
-|--------------------------------------|---------|-------|----------------------------|
-| BOWTIE\_GLYCINE\_MAX\_ENSEMBL\_GM01 | Ensembl | Gm01 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_SOYBEAN | Ensembl | Gm01 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_GLYCINE\_MAX\_ENSEMBL\_GM01 | Ensembl | Gm01 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_SOYBEAN | Ensembl | Gm01 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_GLYCINE\_MAX\_ENSEMBL\_GM01 | Ensembl | Gm01 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_SOYBEAN | Ensembl | Gm01 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_GLYCINE\_MAX\_ENSEMBL\_GM01 | Ensembl | Gm01 | Chromosome Fasta Files |
-| CHR\_SOYBEAN | Ensembl | Gm01 | Chromosome Fasta Files |
-| FAIDX\_GLYCINE\_MAX\_ENSEMBL\_GM01 | Ensembl | Gm01 | Fasta Index .fai File |
-| FAIDX\_SOYBEAN | Ensembl | Gm01 | Fasta Index .fai File |
-| GENOME\_GLYCINE\_MAX\_ENSEMBL\_GM01 | Ensembl | Gm01 | Genome Fasta File |
-| GENOME\_SOYBEAN | Ensembl | Gm01 | Genome Fasta File |
-| GLYCINE\_MAX\_ENSEMBL\_GM01 | Ensembl | Gm01 | Main Directory |
-| PICARD\_GLYCINE\_MAX\_ENSEMBL\_GM01 | Ensembl | Gm01 | Picard .dict File |
-| PICARD\_SOYBEAN | Ensembl | Gm01 | Picard .dict File |
-| SOYBEAN | Ensembl | Gm01 | Main Directory |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Homo\_sapiens</span>
-
-| Short Name | Source | Build | Type |
-|------------------------------------------|--------|-----------|----------------------------|
-| BOWTIE\_HOMO\_SAPIENS\_NCBI\_BUILD37\_2 | NCBI | build37.2 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_HUMAN | NCBI | build37.2 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_HOMO\_SAPIENS\_NCBI\_BUILD37\_2 | NCBI | build37.2 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_HUMAN | NCBI | build37.2 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_HOMO\_SAPIENS\_NCBI\_BUILD37\_2 | NCBI | build37.2 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_HUMAN | NCBI | build37.2 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_HOMO\_SAPIENS\_NCBI\_BUILD37\_2 | NCBI | build37.2 | Chromosome Fasta Files |
-| CHR\_HUMAN | NCBI | build37.2 | Chromosome Fasta Files |
-| FAIDX\_HOMO\_SAPIENS\_NCBI\_BUILD37\_2 | NCBI | build37.2 | Fasta Index .fai File |
-| FAIDX\_HUMAN | NCBI | build37.2 | Fasta Index .fai File |
-| GENOME\_HOMO\_SAPIENS\_NCBI\_BUILD37\_2 | NCBI | build37.2 | Genome Fasta File |
-| GENOME\_HUMAN | NCBI | build37.2 | Genome Fasta File |
-| HOMO\_SAPIENS\_NCBI\_BUILD37\_2 | NCBI | build37.2 | Main Directory |
-| HUMAN | NCBI | build37.2 | Main Directory |
-| PICARD\_HOMO\_SAPIENS\_NCBI\_BUILD37\_2 | NCBI | build37.2 | Picard .dict File |
-| PICARD\_HUMAN | NCBI | build37.2 | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Macaca\_mulatta</span>
-
-| Short Name | Source | Build | Type |
-|--------------------------------------------|---------|---------|----------------------------|
-| BOWTIE\_MACACA\_MULATTA | Ensembl | Mmul\_1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_MACACA\_MULATTA\_ENSEMBL\_MMUL\_1 | Ensembl | Mmul\_1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_MACACA\_MULATTA | Ensembl | Mmul\_1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_MACACA\_MULATTA\_ENSEMBL\_MMUL\_1 | Ensembl | Mmul\_1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_MACACA\_MULATTA | Ensembl | Mmul\_1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_MACACA\_MULATTA\_ENSEMBL\_MMUL\_1 | Ensembl | Mmul\_1 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_MACACA\_MULATTA | Ensembl | Mmul\_1 | Chromosome Fasta Files |
-| CHR\_MACACA\_MULATTA\_ENSEMBL\_MMUL\_1 | Ensembl | Mmul\_1 | Chromosome Fasta Files |
-| FAIDX\_MACACA\_MULATTA | Ensembl | Mmul\_1 | Fasta Index .fai File |
-| FAIDX\_MACACA\_MULATTA\_ENSEMBL\_MMUL\_1 | Ensembl | Mmul\_1 | Fasta Index .fai File |
-| GENOME\_MACACA\_MULATTA | Ensembl | Mmul\_1 | Genome Fasta File |
-| GENOME\_MACACA\_MULATTA\_ENSEMBL\_MMUL\_1 | Ensembl | Mmul\_1 | Genome Fasta File |
-| MACACA\_MULATTA | Ensembl | Mmul\_1 | Main Directory |
-| MACACA\_MULATTA\_ENSEMBL\_MMUL\_1 | Ensembl | Mmul\_1 | Main Directory |
-| PICARD\_MACACA\_MULATTA | Ensembl | Mmul\_1 | Picard .dict File |
-| PICARD\_MACACA\_MULATTA\_ENSEMBL\_MMUL\_1 | Ensembl | Mmul\_1 | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Mus\_musculus</span>
-
-| Short Name | Source | Build | Type |
-|--------------------------------------|--------|--------|----------------------------|
-| BOWTIE\_MOUSE | NCBI | GRCm38 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_MUS\_MUSCULUS\_NCBI\_GRCM38 | NCBI | GRCm38 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_MOUSE | NCBI | GRCm38 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_MUS\_MUSCULUS\_NCBI\_GRCM38 | NCBI | GRCm38 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_MOUSE | NCBI | GRCm38 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_MUS\_MUSCULUS\_NCBI\_GRCM38 | NCBI | GRCm38 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_MOUSE | NCBI | GRCm38 | Chromosome Fasta Files |
-| CHR\_MUS\_MUSCULUS\_NCBI\_GRCM38 | NCBI | GRCm38 | Chromosome Fasta Files |
-| FAIDX\_MOUSE | NCBI | GRCm38 | Fasta Index .fai File |
-| FAIDX\_MUS\_MUSCULUS\_NCBI\_GRCM38 | NCBI | GRCm38 | Fasta Index .fai File |
-| GENOME\_MOUSE | NCBI | GRCm38 | Genome Fasta File |
-| GENOME\_MUS\_MUSCULUS\_NCBI\_GRCM38 | NCBI | GRCm38 | Genome Fasta File |
-| MOUSE | NCBI | GRCm38 | Main Directory |
-| MUS\_MUSCULUS\_NCBI\_GRCM38 | NCBI | GRCm38 | Main Directory |
-| PICARD\_MOUSE | NCBI | GRCm38 | Picard .dict File |
-| PICARD\_MUS\_MUSCULUS\_NCBI\_GRCM38 | NCBI | GRCm38 | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Mycobacterium\_tuberculosis\_H37RV</span>
-
-| Short Name | Source | Build | Type |
-|-----------------------------------------------------------------|--------|------------|----------------------------|
-| BOWTIE\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV | NCBI | 2001-09-07 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV\_NCBI\_2001\_09\_07 | NCBI | 2001-09-07 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV | NCBI | 2001-09-07 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV\_NCBI\_2001\_09\_07 | NCBI | 2001-09-07 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV | NCBI | 2001-09-07 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV\_NCBI\_2001\_09\_07 | NCBI | 2001-09-07 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV | NCBI | 2001-09-07 | Chromosome Fasta Files |
-| CHR\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV\_NCBI\_2001\_09\_07 | NCBI | 2001-09-07 | Chromosome Fasta Files |
-| FAIDX\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV | NCBI | 2001-09-07 | Fasta Index .fai File |
-| FAIDX\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV\_NCBI\_2001\_09\_07 | NCBI | 2001-09-07 | Fasta Index .fai File |
-| GENOME\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV | NCBI | 2001-09-07 | Genome Fasta File |
-| GENOME\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV\_NCBI\_2001\_09\_07 | NCBI | 2001-09-07 | Genome Fasta File |
-| MYCOBACTERIUM\_TUBERCULOSIS\_H37RV | NCBI | 2001-09-07 | Main Directory |
-| MYCOBACTERIUM\_TUBERCULOSIS\_H37RV\_NCBI\_2001\_09\_07 | NCBI | 2001-09-07 | Main Directory |
-| PICARD\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV | NCBI | 2001-09-07 | Picard .dict File |
-| PICARD\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV\_NCBI\_2001\_09\_07 | NCBI | 2001-09-07 | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Oryza\_sativa\_japonica</span>
-
-| Short Name | Source | Build | Type |
-|--------------------------------------------------------|---------|-----------|----------------------------|
-| BOWTIE\_ORYZA\_SATIVA\_JAPONICA\_ENSEMBL\_IRGSP\_1\_0 | Ensembl | IRGSP-1.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_RICE | Ensembl | IRGSP-1.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_ORYZA\_SATIVA\_JAPONICA\_ENSEMBL\_IRGSP\_1\_0 | Ensembl | IRGSP-1.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_RICE | Ensembl | IRGSP-1.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_ORYZA\_SATIVA\_JAPONICA\_ENSEMBL\_IRGSP\_1\_0 | Ensembl | IRGSP-1.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_RICE | Ensembl | IRGSP-1.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_ORYZA\_SATIVA\_JAPONICA\_ENSEMBL\_IRGSP\_1\_0 | Ensembl | IRGSP-1.0 | Chromosome Fasta Files |
-| CHR\_RICE | Ensembl | IRGSP-1.0 | Chromosome Fasta Files |
-| FAIDX\_ORYZA\_SATIVA\_JAPONICA\_ENSEMBL\_IRGSP\_1\_0 | Ensembl | IRGSP-1.0 | Fasta Index .fai File |
-| FAIDX\_RICE | Ensembl | IRGSP-1.0 | Fasta Index .fai File |
-| GENOME\_ORYZA\_SATIVA\_JAPONICA\_ENSEMBL\_IRGSP\_1\_0 | Ensembl | IRGSP-1.0 | Genome Fasta File |
-| GENOME\_RICE | Ensembl | IRGSP-1.0 | Genome Fasta File |
-| ORYZA\_SATIVA\_JAPONICA\_ENSEMBL\_IRGSP\_1\_0 | Ensembl | IRGSP-1.0 | Main Directory |
-| PICARD\_ORYZA\_SATIVA\_JAPONICA\_ENSEMBL\_IRGSP\_1\_0 | Ensembl | IRGSP-1.0 | Picard .dict File |
-| PICARD\_RICE | Ensembl | IRGSP-1.0 | Picard .dict File |
-| RICE | Ensembl | IRGSP-1.0 | Main Directory |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Pan\_troglodytes</span>
-
-| Short Name | Source | Build | Type |
-|--------------------------------------------|--------|----------|----------------------------|
-| BOWTIE\_PAN\_TROGLODYTES | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_PAN\_TROGLODYTES\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_PAN\_TROGLODYTES | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_PAN\_TROGLODYTES\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_PAN\_TROGLODYTES | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_PAN\_TROGLODYTES\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_PAN\_TROGLODYTES | NCBI | build3.1 | Chromosome Fasta Files |
-| CHR\_PAN\_TROGLODYTES\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Chromosome Fasta Files |
-| FAIDX\_PAN\_TROGLODYTES | NCBI | build3.1 | Fasta Index .fai File |
-| FAIDX\_PAN\_TROGLODYTES\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Fasta Index .fai File |
-| GENOME\_PAN\_TROGLODYTES | NCBI | build3.1 | Genome Fasta File |
-| GENOME\_PAN\_TROGLODYTES\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Genome Fasta File |
-| PAN\_TROGLODYTES | NCBI | build3.1 | Main Directory |
-| PAN\_TROGLODYTES\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Main Directory |
-| PICARD\_PAN\_TROGLODYTES | NCBI | build3.1 | Picard .dict File |
-| PICARD\_PAN\_TROGLODYTES\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">PhiX</span>
-
-| Short Name | Source | Build | Type |
-|------------------------------|----------|-------|----------------------------|
-| BOWTIE\_PHIX | Illumina | RTA | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_PHIX\_ILLUMINA\_RTA | Illumina | RTA | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_PHIX | Illumina | RTA | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_PHIX\_ILLUMINA\_RTA | Illumina | RTA | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_PHIX | Illumina | RTA | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_PHIX\_ILLUMINA\_RTA | Illumina | RTA | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_PHIX | Illumina | RTA | Chromosome Fasta Files |
-| CHR\_PHIX\_ILLUMINA\_RTA | Illumina | RTA | Chromosome Fasta Files |
-| FAIDX\_PHIX | Illumina | RTA | Fasta Index .fai File |
-| FAIDX\_PHIX\_ILLUMINA\_RTA | Illumina | RTA | Fasta Index .fai File |
-| GENOME\_PHIX | Illumina | RTA | Genome Fasta File |
-| GENOME\_PHIX\_ILLUMINA\_RTA | Illumina | RTA | Genome Fasta File |
-| PHIX | Illumina | RTA | Main Directory |
-| PHIX\_ILLUMINA\_RTA | Illumina | RTA | Main Directory |
-| PICARD\_PHIX | Illumina | RTA | Picard .dict File |
-| PICARD\_PHIX\_ILLUMINA\_RTA | Illumina | RTA | Picard .dict File |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Pseudomonas\_aeruginosa\_PAO1</span>
-
-| Short Name | Source | Build | Type |
-|------------------------------------------------------------|--------|------------|----------------------------|
-| BOWTIE\_PSEUDOMONAS\_AERUGINOSA\_PAO1 | NCBI | 2000-09-13 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_PSEUDOMONAS\_AERUGINOSA\_PAO1\_NCBI\_2000\_09\_13 | NCBI | 2000-09-13 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_PSEUDOMONAS\_AERUGINOSA\_PAO1 | NCBI | 2000-09-13 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_PSEUDOMONAS\_AERUGINOSA\_PAO1\_NCBI\_2000\_09\_13 | NCBI | 2000-09-13 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_PSEUDOMONAS\_AERUGINOSA\_PAO1 | NCBI | 2000-09-13 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_PSEUDOMONAS\_AERUGINOSA\_PAO1\_NCBI\_2000\_09\_13 | NCBI | 2000-09-13 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_PSEUDOMONAS\_AERUGINOSA\_PAO1 | NCBI | 2000-09-13 | Chromosome Fasta Files |
-| CHR\_PSEUDOMONAS\_AERUGINOSA\_PAO1\_NCBI\_2000\_09\_13 | NCBI | 2000-09-13 | Chromosome Fasta Files |
-| FAIDX\_PSEUDOMONAS\_AERUGINOSA\_PAO1 | NCBI | 2000-09-13 | Fasta Index .fai File |
-| FAIDX\_PSEUDOMONAS\_AERUGINOSA\_PAO1\_NCBI\_2000\_09\_13 | NCBI | 2000-09-13 | Fasta Index .fai File |
-| GENOME\_PSEUDOMONAS\_AERUGINOSA\_PAO1 | NCBI | 2000-09-13 | Genome Fasta File |
-| GENOME\_PSEUDOMONAS\_AERUGINOSA\_PAO1\_NCBI\_2000\_09\_13 | NCBI | 2000-09-13 | Genome Fasta File |
-| PICARD\_PSEUDOMONAS\_AERUGINOSA\_PAO1 | NCBI | 2000-09-13 | Picard .dict File |
-| PICARD\_PSEUDOMONAS\_AERUGINOSA\_PAO1\_NCBI\_2000\_09\_13 | NCBI | 2000-09-13 | Picard .dict File |
-| PSEUDOMONAS\_AERUGINOSA\_PAO1 | NCBI | 2000-09-13 | Main Directory |
-| PSEUDOMONAS\_AERUGINOSA\_PAO1\_NCBI\_2000\_09\_13 | NCBI | 2000-09-13 | Main Directory |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Rattus\_norvegicus</span>
-
-| Short Name | Source | Build | Type |
-|-----------------------------------------------|--------|-----------|----------------------------|
-| BOWTIE\_RAT | NCBI | Rnor\_5.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_5\_0 | NCBI | Rnor\_5.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_6\_0 | NCBI | Rnor\_6.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_RAT | NCBI | Rnor\_5.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_5\_0 | NCBI | Rnor\_5.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_6\_0 | NCBI | Rnor\_6.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_RAT | NCBI | Rnor\_5.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_5\_0 | NCBI | Rnor\_5.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_6\_0 | NCBI | Rnor\_6.0 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_RAT | NCBI | Rnor\_5.0 | Chromosome Fasta Files |
-| CHR\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_5\_0 | NCBI | Rnor\_5.0 | Chromosome Fasta Files |
-| CHR\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_6\_0 | NCBI | Rnor\_6.0 | Chromosome Fasta Files |
-| FAIDX\_RAT | NCBI | Rnor\_5.0 | Fasta Index .fai File |
-| FAIDX\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_5\_0 | NCBI | Rnor\_5.0 | Fasta Index .fai File |
-| FAIDX\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_6\_0 | NCBI | Rnor\_6.0 | Fasta Index .fai File |
-| GENOME\_RAT | NCBI | Rnor\_5.0 | Genome Fasta File |
-| GENOME\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_5\_0 | NCBI | Rnor\_5.0 | Genome Fasta File |
-| GENOME\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_6\_0 | NCBI | Rnor\_6.0 | Genome Fasta File |
-| PICARD\_RAT | NCBI | Rnor\_5.0 | Picard .dict File |
-| PICARD\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_5\_0 | NCBI | Rnor\_5.0 | Picard .dict File |
-| PICARD\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_6\_0 | NCBI | Rnor\_6.0 | Picard .dict File |
-| RAT | NCBI | Rnor\_5.0 | Main Directory |
-| RATTUS\_NORVEGICUS\_NCBI\_RNOR\_5\_0 | NCBI | Rnor\_5.0 | Main Directory |
-| RATTUS\_NORVEGICUS\_NCBI\_RNOR\_6\_0 | NCBI | Rnor\_6.0 | Main Directory |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Saccharomyces\_cerevisiae</span>
-
-| Short Name | Source | Build | Type |
-|-----------------------------------------------------|--------|----------|----------------------------|
-| BOWTIE\_SACCHAROMYCES\_CEREVISIAE\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_YEAST | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_SACCHAROMYCES\_CEREVISIAE\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_YEAST | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_SACCHAROMYCES\_CEREVISIAE\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_YEAST | NCBI | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_SACCHAROMYCES\_CEREVISIAE\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Chromosome Fasta Files |
-| CHR\_YEAST | NCBI | build3.1 | Chromosome Fasta Files |
-| FAIDX\_SACCHAROMYCES\_CEREVISIAE\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Fasta Index .fai File |
-| FAIDX\_YEAST | NCBI | build3.1 | Fasta Index .fai File |
-| GENOME\_SACCHAROMYCES\_CEREVISIAE\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Genome Fasta File |
-| GENOME\_YEAST | NCBI | build3.1 | Genome Fasta File |
-| PICARD\_SACCHAROMYCES\_CEREVISIAE\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Picard .dict File |
-| PICARD\_YEAST | NCBI | build3.1 | Picard .dict File |
-| SACCHAROMYCES\_CEREVISIAE\_NCBI\_BUILD3\_1 | NCBI | build3.1 | Main Directory |
-| YEAST | NCBI | build3.1 | Main Directory |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Sorghum\_bicolor</span>
-
-| Short Name | Source | Build | Type |
-|------------------------------------------|---------|-------|----------------------------|
-| BOWTIE\_SORGHUM | Ensembl | Sbi1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_SORGHUM\_BICOLOR\_ENSEMBL\_SBI1 | Ensembl | Sbi1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_SORGHUM | Ensembl | Sbi1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_SORGHUM\_BICOLOR\_ENSEMBL\_SBI1 | Ensembl | Sbi1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_SORGHUM | Ensembl | Sbi1 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_SORGHUM\_BICOLOR\_ENSEMBL\_SBI1 | Ensembl | Sbi1 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_SORGHUM | Ensembl | Sbi1 | Chromosome Fasta Files |
-| CHR\_SORGHUM\_BICOLOR\_ENSEMBL\_SBI1 | Ensembl | Sbi1 | Chromosome Fasta Files |
-| FAIDX\_SORGHUM | Ensembl | Sbi1 | Fasta Index .fai File |
-| FAIDX\_SORGHUM\_BICOLOR\_ENSEMBL\_SBI1 | Ensembl | Sbi1 | Fasta Index .fai File |
-| GENOME\_SORGHUM | Ensembl | Sbi1 | Genome Fasta File |
-| GENOME\_SORGHUM\_BICOLOR\_ENSEMBL\_SBI1 | Ensembl | Sbi1 | Genome Fasta File |
-| PICARD\_SORGHUM | Ensembl | Sbi1 | Picard .dict File |
-| PICARD\_SORGHUM\_BICOLOR\_ENSEMBL\_SBI1 | Ensembl | Sbi1 | Picard .dict File |
-| SORGHUM | Ensembl | Sbi1 | Main Directory |
-| SORGHUM\_BICOLOR\_ENSEMBL\_SBI1 | Ensembl | Sbi1 | Main Directory |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Staphylococcus\_aureus\_NCTC\_8325</span>
-
-| Short Name | Source | Build | Type |
-|-----------------------------------------------------------------|--------|------------|----------------------------|
-| BOWTIE\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325 | NCBI | 2006-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325\_NCBI\_2006\_02\_13 | NCBI | 2006-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325 | NCBI | 2006-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325\_NCBI\_2006\_02\_13 | NCBI | 2006-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325 | NCBI | 2006-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325\_NCBI\_2006\_02\_13 | NCBI | 2006-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325 | NCBI | 2006-02-13 | Chromosome Fasta Files |
-| CHR\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325\_NCBI\_2006\_02\_13 | NCBI | 2006-02-13 | Chromosome Fasta Files |
-| FAIDX\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325 | NCBI | 2006-02-13 | Fasta Index .fai File |
-| FAIDX\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325\_NCBI\_2006\_02\_13 | NCBI | 2006-02-13 | Fasta Index .fai File |
-| GENOME\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325 | NCBI | 2006-02-13 | Genome Fasta File |
-| GENOME\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325\_NCBI\_2006\_02\_13 | NCBI | 2006-02-13 | Genome Fasta File |
-| PICARD\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325 | NCBI | 2006-02-13 | Picard .dict File |
-| PICARD\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325\_NCBI\_2006\_02\_13 | NCBI | 2006-02-13 | Picard .dict File |
-| STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325 | NCBI | 2006-02-13 | Main Directory |
-| STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325\_NCBI\_2006\_02\_13 | NCBI | 2006-02-13 | Main Directory |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Sus\_scrofa</span>
-
-| Short Name | Source | Build | Type |
-|------------------------------------------|--------|-------------|----------------------------|
-| BOWTIE\_PIG | NCBI | Sscrofa10.2 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_SUS\_SCROFA\_NCBI\_SSCROFA10\_2 | NCBI | Sscrofa10.2 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_PIG | NCBI | Sscrofa10.2 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_SUS\_SCROFA\_NCBI\_SSCROFA10\_2 | NCBI | Sscrofa10.2 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_PIG | NCBI | Sscrofa10.2 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_SUS\_SCROFA\_NCBI\_SSCROFA10\_2 | NCBI | Sscrofa10.2 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_PIG | NCBI | Sscrofa10.2 | Chromosome Fasta Files |
-| CHR\_SUS\_SCROFA\_NCBI\_SSCROFA10\_2 | NCBI | Sscrofa10.2 | Chromosome Fasta Files |
-| FAIDX\_PIG | NCBI | Sscrofa10.2 | Fasta Index .fai File |
-| FAIDX\_SUS\_SCROFA\_NCBI\_SSCROFA10\_2 | NCBI | Sscrofa10.2 | Fasta Index .fai File |
-| GENOME\_PIG | NCBI | Sscrofa10.2 | Genome Fasta File |
-| GENOME\_SUS\_SCROFA\_NCBI\_SSCROFA10\_2 | NCBI | Sscrofa10.2 | Genome Fasta File |
-| PICARD\_PIG | NCBI | Sscrofa10.2 | Picard .dict File |
-| PICARD\_SUS\_SCROFA\_NCBI\_SSCROFA10\_2 | NCBI | Sscrofa10.2 | Picard .dict File |
-| PIG | NCBI | Sscrofa10.2 | Main Directory |
-| SUS\_SCROFA\_NCBI\_SSCROFA10\_2 | NCBI | Sscrofa10.2 | Main Directory |
-
-<span
-class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
-class="expand-control-text">Zea\_mays</span>
-
-| Short Name | Source | Build | Type |
-|------------------------------------|---------|-------|----------------------------|
-| BOWTIE\_MAIZE | Ensembl | AGPv3 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE\_ZEA\_MAYS\_ENSEMBL\_AGPV3 | Ensembl | AGPv3 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_MAIZE | Ensembl | AGPv3 | Bwa\|Bowtie\|Bowtie2 Index |
-| BOWTIE2\_ZEA\_MAYS\_ENSEMBL\_AGPV3 | Ensembl | AGPv3 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_MAIZE | Ensembl | AGPv3 | Bwa\|Bowtie\|Bowtie2 Index |
-| BWA\_ZEA\_MAYS\_ENSEMBL\_AGPV3 | Ensembl | AGPv3 | Bwa\|Bowtie\|Bowtie2 Index |
-| CHR\_MAIZE | Ensembl | AGPv3 | Chromosome Fasta Files |
-| CHR\_ZEA\_MAYS\_ENSEMBL\_AGPV3 | Ensembl | AGPv3 | Chromosome Fasta Files |
-| FAIDX\_MAIZE | Ensembl | AGPv3 | Fasta Index .fai File |
-| FAIDX\_ZEA\_MAYS\_ENSEMBL\_AGPV3 | Ensembl | AGPv3 | Fasta Index .fai File |
-| GENOME\_MAIZE | Ensembl | AGPv3 | Genome Fasta File |
-| GENOME\_ZEA\_MAYS\_ENSEMBL\_AGPV3 | Ensembl | AGPv3 | Genome Fasta File |
-| MAIZE | Ensembl | AGPv3 | Main Directory |
-| PICARD\_MAIZE | Ensembl | AGPv3 | Picard .dict File |
-| PICARD\_ZEA\_MAYS\_ENSEMBL\_AGPV3 | Ensembl | AGPv3 | Picard .dict File |
-| ZEA\_MAYS\_ENSEMBL\_AGPV3 | Ensembl | AGPv3 | Main Directory |
-
-Attachments:
-------------
-
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane.xml](attachments/15171894/15171895.xml)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Arabidopsis\_thaliana.xsl](attachments/15171894/15171896.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Bacillus\_cereus\_ATCC\_10987.xsl](attachments/15171894/15171897.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Bacillus\_subtilis\_168.xsl](attachments/15171894/15171898.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Bos\_taurus.xsl](attachments/15171894/15171899.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Caenorhabditis\_elegans.xsl](attachments/15171894/15171900.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Canis\_familiaris.xsl](attachments/15171894/15171901.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Danio\_rerio.xsl](attachments/15171894/15171902.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Drosophila\_melanogaster.xsl](attachments/15171894/15171903.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Enterobacteriophage\_lambda.xsl](attachments/15171894/15171904.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Equus\_caballus.xsl](attachments/15171894/15171905.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Escherichia\_coli\_K\_12\_DH10B.xsl](attachments/15171894/15171906.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Escherichia\_coli\_K\_12\_MG1655.xsl](attachments/15171894/15171907.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Gallus\_gallus.xsl](attachments/15171894/15171908.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Glycine\_max.xsl](attachments/15171894/15171909.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Homo\_sapiens.xsl](attachments/15171894/15171910.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Macaca\_mulatta.xsl](attachments/15171894/15171911.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Mus\_musculus.xsl](attachments/15171894/15171912.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Mycobacterium\_tuberculosis\_H37RV.xsl](attachments/15171894/15171913.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Oryza\_sativa\_japonica.xsl](attachments/15171894/15171914.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Pan\_troglodytes.xsl](attachments/15171894/15171915.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_PhiX.xsl](attachments/15171894/15171916.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Pseudomonas\_aeruginosa\_PAO1.xsl](attachments/15171894/15171917.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Rattus\_norvegicus.xsl](attachments/15171894/15171918.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Saccharomyces\_cerevisiae.xsl](attachments/15171894/15171919.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Sorghum\_bicolor.xsl](attachments/15171894/15171920.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Staphylococcus\_aureus\_NCTC\_8325.xsl](attachments/15171894/15171921.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Sus\_scrofa.xsl](attachments/15171894/15171922.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane\_Zea\_mays.xsl](attachments/15171894/15171923.xsl)
-(application/octet-stream)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane.xml](attachments/15171894/35324389.xml) (text/xml)
-<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
-[biodata\_crane.xml](attachments/15171894/35324388.xml) (text/xml)
-
-
--
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