diff --git a/content/Applications/Application_Specific_Guides/Jupyter.md b/content/Applications/Application_Specific_Guides/Jupyter.md
index 442133957028bc65e34a1beefac28eb30ea0cc3b..b3f5de586bf6506cac18178ceb0145697dc27e0d 100644
--- a/content/Applications/Application_Specific_Guides/Jupyter.md
+++ b/content/Applications/Application_Specific_Guides/Jupyter.md
@@ -51,7 +51,7 @@ Select the other options based on your computing needs. Note that a SLURM Job wi
Many popular `python` and `R` packages are already installed and available within Jupyter Notebooks.
However, it is possible to install custom packages to be used in notebooks by creating a custom Anaconda
Environment. Detailed information on how to create such an environment can be found at
- [Using an Anaconda Environment in a Jupyter Notebook on Crane]({{< relref "using_anaconda_package_manager/#using-an-anaconda-environment-in-a-jupyter-notebook-on-crane" >}}).
+ [Using an Anaconda Environment in a Jupyter Notebook on Crane]({{< relref "/Applications/Using_Your_Own_Software/using_anaconda_package_manager#using-an-anaconda-environment-in-a-jupyter-notebook-on-crane" >}}).
---
diff --git a/content/Applications/Application_Specific_Guides/allinea_profiling_and_debugging/allinea_performance_reports/blast_with_allinea_performance_reports.md b/content/Applications/Application_Specific_Guides/allinea_profiling_and_debugging/allinea_performance_reports/blast_with_allinea_performance_reports.md
index ae01912ee4795c0040d891b2c657c38e927c7148..5fd9443a4f6781a8c6c28da63aaec321dfa92f73 100644
--- a/content/Applications/Application_Specific_Guides/allinea_profiling_and_debugging/allinea_performance_reports/blast_with_allinea_performance_reports.md
+++ b/content/Applications/Application_Specific_Guides/allinea_profiling_and_debugging/allinea_performance_reports/blast_with_allinea_performance_reports.md
@@ -4,7 +4,7 @@ description = "Example of how to profile BLAST using Allinea Performance Reports
+++
Simple example of using
-[BLAST]({{< relref "/guides/running_applications/bioinformatics_tools/alignment_tools/blast/running_blast_alignment" >}})
+[BLAST]({{< relref "/Applications/Application_Specific_Guides/bioinformatics_tools/alignment_tools/blast/running_blast_alignment" >}})
with Allinea Performance Reports (`perf-report`) on Crane is shown below:
{{% panel theme="info" header="blastn_perf_report.submit" %}}
diff --git a/content/Applications/Application_Specific_Guides/allinea_profiling_and_debugging/allinea_performance_reports/ray_with_allinea_performance_reports.md b/content/Applications/Application_Specific_Guides/allinea_profiling_and_debugging/allinea_performance_reports/ray_with_allinea_performance_reports.md
index 09fab74bcf78dd57f6f5d8213bb20d9a716adfcf..de4dc0d5c3b8a52506a6a44c14615fdb8f4ba244 100644
--- a/content/Applications/Application_Specific_Guides/allinea_profiling_and_debugging/allinea_performance_reports/ray_with_allinea_performance_reports.md
+++ b/content/Applications/Application_Specific_Guides/allinea_profiling_and_debugging/allinea_performance_reports/ray_with_allinea_performance_reports.md
@@ -3,7 +3,7 @@ title = "Ray with Allinea Performance Reports"
description = "Example of how to profile Ray using Allinea Performance Reports"
+++
-Simple example of using [Ray]({{< relref "/guides/running_applications/bioinformatics_tools/de_novo_assembly_tools/ray" >}})
+Simple example of using [Ray]({{< relref "/Applications/Application_Specific_Guides/bioinformatics_tools/de_novo_assembly_tools/ray" >}})
with Allinea PerformanceReports (`perf-report`) on Tusker is shown below:
{{% panel theme="info" header="ray_perf_report.submit" %}}
diff --git a/content/Applications/Application_Specific_Guides/bioinformatics_tools/alignment_tools/blast/running_blast_alignment.md b/content/Applications/Application_Specific_Guides/bioinformatics_tools/alignment_tools/blast/running_blast_alignment.md
index 4024fe76fff77a3f8b5e21ef732fad3c8297e642..e934526769f9de2edef907c1a5ed6e5377c0a02a 100644
--- a/content/Applications/Application_Specific_Guides/bioinformatics_tools/alignment_tools/blast/running_blast_alignment.md
+++ b/content/Applications/Application_Specific_Guides/bioinformatics_tools/alignment_tools/blast/running_blast_alignment.md
@@ -28,7 +28,7 @@ $ blastn -help
These BLAST alignment commands are multi-threaded, and therefore using the BLAST option **-num_threads <number_of_CPUs>** is recommended.
-HCC hosts multiple BLAST databases and indices on Crane. In order to use these resources, the ["biodata" module] ({{<relref "/guides/running_applications/bioinformatics_tools/biodata_module">}}) needs to be loaded first. The **$BLAST** variable contains the following currently available databases:
+HCC hosts multiple BLAST databases and indices on Crane. In order to use these resources, the ["biodata" module] ({{<relref "/Applications/Application_Specific_Guides/bioinformatics_tools/biodata_module">}}) needs to be loaded first. The **$BLAST** variable contains the following currently available databases:
- **16SMicrobial**
- **env_nt**
diff --git a/content/Applications/Application_Specific_Guides/dmtcp_checkpointing.md b/content/Applications/Application_Specific_Guides/dmtcp_checkpointing.md
index 5fca1a4c7816922840533973167b677822aa44a1..66985673303c470869f558875faa9a604171bbb6 100644
--- a/content/Applications/Application_Specific_Guides/dmtcp_checkpointing.md
+++ b/content/Applications/Application_Specific_Guides/dmtcp_checkpointing.md
@@ -61,7 +61,7 @@ will keep running with the options defined in the initial
Simple example of using DMTCP with
-[BLAST]({{< relref "/guides/running_applications/bioinformatics_tools/alignment_tools/blast/running_blast_alignment" >}})
+[BLAST]({{< relref "/Applications/Application_Specific_Guides/bioinformatics_tools/alignment_tools/blast/running_blast_alignment" >}})
on crane is shown below:
{{% panel theme="info" header="dmtcp_blastx.submit" %}}
diff --git a/content/_index.md b/content/_index.md
index bc6b11c4317d565a8da49beda90a1ffe3b1a2086..7aa654ad3bc043ae810821f4dfed7fa5967a8cc6 100644
--- a/content/_index.md
+++ b/content/_index.md
@@ -59,7 +59,7 @@ Duo Security
Duo two-factor authentication is **required** for access to HCC
resources. Registration and usage of Duo security can be found in this
-section: [Setting up and using Duo]({{< relref "setting_up_and_using_duo">}})
+section: [Setting up and using Duo]({{< relref "/Accounts/setting_up_and_using_duo">}})
**Important Notes**
diff --git a/content/connecting/_index.md b/content/connecting/_index.md
index bc6b11c4317d565a8da49beda90a1ffe3b1a2086..7aa654ad3bc043ae810821f4dfed7fa5967a8cc6 100644
--- a/content/connecting/_index.md
+++ b/content/connecting/_index.md
@@ -59,7 +59,7 @@ Duo Security
Duo two-factor authentication is **required** for access to HCC
resources. Registration and usage of Duo security can be found in this
-section: [Setting up and using Duo]({{< relref "setting_up_and_using_duo">}})
+section: [Setting up and using Duo]({{< relref "/Accounts/setting_up_and_using_duo">}})
**Important Notes**
diff --git a/content/faq/_index.md b/content/faq/_index.md
index 1090e762238e137bcedf7e5e923bf2848b494010..75240bf5e483aadc40532c091428e5f54d8cd79d 100644
--- a/content/faq/_index.md
+++ b/content/faq/_index.md
@@ -36,7 +36,7 @@ how to install the necessary software for your operating system
Information on how to change or retrieve your password can be found on
the documentation page: [How to change your
-password]({{< relref "how_to_change_your_password" >}})
+password]({{< relref "/Accounts/how_to_change_your_password" >}})
All passwords must be at least 8 characters in length and must contain
diff --git a/content/guides/submitting_jobs/_index.md b/content/guides/submitting_jobs/_index.md
index 73e0272e1262abf0a7f246837d581e157f07feb8..ad8002d63eb36a95954738eee5d6519a95e81f9b 100644
--- a/content/guides/submitting_jobs/_index.md
+++ b/content/guides/submitting_jobs/_index.md
@@ -11,8 +11,7 @@ must create a SLURM script that will run your processing. After
submitting the job, SLURM will schedule your processing on an available
worker node.
-Before writing a submit file, you may need to
-[compile your application]({{< relref "/guides/running_applications/compiling_source_code" >}}).
+Before writing a submit file, you may need to compile your application.
- [Ensure proper working directory for job output](#ensure-proper-working-directory-for-job-output)
- [Creating a SLURM Submit File](#creating-a-slurm-submit-file)
diff --git a/content/guides/submitting_jobs/submitting_an_openmp_job.md b/content/guides/submitting_jobs/submitting_an_openmp_job.md
index 7c04168c8d6bc215cdb771a76ab3acc2e23f5eba..837f2c15f03aa41d0a9183b4a039ace91568d1f4 100644
--- a/content/guides/submitting_jobs/submitting_an_openmp_job.md
+++ b/content/guides/submitting_jobs/submitting_an_openmp_job.md
@@ -34,7 +34,7 @@ automatically match the `ntasks-per-node` value (in this example 16).
Directions to compile OpenMP can be found on
[Compiling an OpenMP Application]
-({{< relref "/guides/running_applications/compiling_source_code/compiling_an_openmp_application" >}}).
+({{< relref "/Applications/Using_Your_Own_Software/compiling_an_openmp_application" >}}).
### Further Documentation
diff --git a/content/quickstarts/connecting/for_maclinux_users.md b/content/quickstarts/connecting/for_maclinux_users.md
index f5fef28bc50ca8631912be6bc15c090a28733972..d50f41e9256258d8e87f0ed37048b9db7a24e723 100644
--- a/content/quickstarts/connecting/for_maclinux_users.md
+++ b/content/quickstarts/connecting/for_maclinux_users.md
@@ -5,7 +5,7 @@ weight = "22"
+++
##### Use of Duo two-factor authentication is **required** to access HCC resources.
-##### Please see [Setting up and Using Duo]({{< relref "setting_up_and_using_duo" >}}).
+##### Please see [Setting up and Using Duo]({{< relref "/Accounts/setting_up_and_using_duo" >}}).
---
- [Access to HCC Supercomputers] (#access-to-hcc-supercomputers)
- [File Transferring with HCC Supercomputers] (#file-transfering)
diff --git a/content/quickstarts/connecting/for_windows_users.md b/content/quickstarts/connecting/for_windows_users.md
index fb3f1a78c79b221d42d712b8d652eabd5705f642..09494e9149ef2631c14ead2c12f1cf9583e8ae7c 100644
--- a/content/quickstarts/connecting/for_windows_users.md
+++ b/content/quickstarts/connecting/for_windows_users.md
@@ -5,7 +5,7 @@ weight = "20"
+++
##### Use of Duo two-factor authentication is **required** to access HCC resources.
-##### Please see [Setting up and Using Duo]({{< relref "setting_up_and_using_duo" >}}).
+##### Please see [Setting up and Using Duo]({{< relref "/Accounts/setting_up_and_using_duo" >}}).
---
diff --git a/content/quickstarts/connecting/mobaxterm_windows.md b/content/quickstarts/connecting/mobaxterm_windows.md
index 4e64a449499b43337476297b1bbab90cb9b1e38a..6a7c000aeee3aaed927bfd4bcf21282ab2c1afa4 100644
--- a/content/quickstarts/connecting/mobaxterm_windows.md
+++ b/content/quickstarts/connecting/mobaxterm_windows.md
@@ -5,7 +5,7 @@ weight = "22"
+++
##### Use of Duo two-factor authentication is **required** to access HCC resources.
-##### Please see [Setting up and Using Duo]({{< relref "setting_up_and_using_duo" >}}).
+##### Please see [Setting up and Using Duo]({{< relref "/Accounts/setting_up_and_using_duo" >}}).
---
This quick start will help you configure your MobaXterm installation to work with HCC resources.
@@ -76,4 +76,4 @@ In the Generator window, click `Generate` and move your mouse around in the `Key
After the key is generated, go to the `Conversions` tab and select `Export OpenSSH key` and save it to your local machine.
{{< figure src="/images/moba/exportssh.png" height="450" >}}
-**Treat the private key file the same as you would a password. Keep your private key in a secure location and do not share it with anyone.**
\ No newline at end of file
+**Treat the private key file the same as you would a password. Keep your private key in a secure location and do not share it with anyone.**
diff --git a/content/quickstarts/submitting_jobs.md b/content/quickstarts/submitting_jobs.md
index e2ab2fa20ca39a9b7f670d173af745324ad555ba..60f5f28c4c99b39e5e92b870c146ebaf6d99964b 100644
--- a/content/quickstarts/submitting_jobs.md
+++ b/content/quickstarts/submitting_jobs.md
@@ -11,8 +11,7 @@ must create a SLURM script that will run your processing. After
submitting the job, SLURM will schedule your processing on an available
worker node.
-Before writing a submit file, you may need to
-[compile your application]({{< relref "/guides/running_applications/compiling_source_code" >}}).
+Before writing a submit file, you may need to compile your application.
- [Ensure proper working directory for job output](#ensure-proper-working-directory-for-job-output)
- [Creating a SLURM Submit File](#creating-a-slurm-submit-file)