diff --git a/content/events/2016/hcc_fall_kickstart_2016.md b/content/events/2016/hcc_fall_kickstart_2016.md
index 5108c0fcd99edfe409b37bb2cf7882e4b167041d..cd8e491619b38329ea57f054ff4ca0758768149f 100644
--- a/content/events/2016/hcc_fall_kickstart_2016.md
+++ b/content/events/2016/hcc_fall_kickstart_2016.md
@@ -18,7 +18,7 @@ Materials
Etherpad: no longer supported
Software Carpentry
-Lessons: <a href="https://eharstad.github.io/2016-09-08-UNL/" class="external-link">https://eharstad.github.io/2016-09-08-UNL/</a>
+Lessons: [https://eharstad.github.io/2016-09-08-UNL/](https://eharstad.github.io/2016-09-08-UNL/)
Slides for Thursday intro:
diff --git a/content/events/2016/hcc_qiime_workshop_2016.md b/content/events/2016/hcc_qiime_workshop_2016.md
index e3bbf1ff24bb51eff08a5055f951cbe528f3184c..5b97b54595210a70b04eee24f9a081c2972eeea6 100644
--- a/content/events/2016/hcc_qiime_workshop_2016.md
+++ b/content/events/2016/hcc_qiime_workshop_2016.md
@@ -9,7 +9,7 @@ Where: NIC Food Innovation Campus room 277
1901 N. 21st St., Lincoln, 68588
-<a href="https://hcc.unl.edu/hcc-qiime-workshop" class="external-link">Details and Agenda</a>
+[Details and Agenda](https://hcc.unl.edu/hcc-qiime-workshop)
------------------------------------------------------------------------
@@ -20,7 +20,7 @@ Slides for morning
introduction: [QIIME\_2016\_intro.pdf](https://unl.box.com/s/d2o92uoar7x59a7rxl0f3y7o3ncy0swq)
Software Carpentry Unix Shell
-Lessons: <a href="http://eharstad.github.io/shell-novice/" class="external-link">http://eharstad.github.io/shell-novice/</a>
+Lessons: [http://eharstad.github.io/shell-novice/](http://eharstad.github.io/shell-novice/)
Slides for HCC
Overview: [2016\_Qiime.pdf](https://unl.box.com/s/4gryu7ny8lo95fs8clyu566k2ubbhtef)
@@ -29,7 +29,7 @@ QIIME
slides: [QIIME\_Talk\_Oct20.pdf](https://unl.box.com/s/h4zi0h27t1t16u9due3ybfrxmsdebzin)
QIIME
-tutorial: <a href="http://bioinformatics.unl.edu/qiime_tutorial.pdf" class="external-link">http://bioinformatics.unl.edu/qiime_tutorial.pdf</a><a href="http://bioinformatics.unl.edu/qiime_tutorial.pdf" class="external-link"></a>
+tutorial: [http://bioinformatics.unl.edu/qiime_tutorial.pdf](http://bioinformatics.unl.edu/qiime_tutorial.pdf)
------------------------------------------------------------------------
@@ -40,7 +40,7 @@ tutorial: <a href="http://bioinformatics.unl.edu/qiime_tutorial.pdf" class="ext
--------------------------------------------------------------------------------------------------------------------------------------------------------------
1. To participate in this workshop, you will need to
- <a href="http://hcc.unl.edu/new-user-request" class="external-link">sign up for an HCC account</a>
+ [sign up for an HCC account](http://hcc.unl.edu/new-user-request)
(if you do not already have one). Please complete the account
application and [DUO two-factor authentication
setup](https://hcc-docs.unl.edu/display/HCCDOC/Setting+up+and+using+Duo)
@@ -55,17 +55,17 @@ tutorial: <a href="http://bioinformatics.unl.edu/qiime_tutorial.pdf" class="ext
and [Mac/Linux
Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/).
If you have any problems logging in, please email us at
- <a href="mailto:hcc-support@unl.edu" class="external-link">hcc-support@unl.edu</a>.
+ [hcc-support@unl.edu](mailto:hcc-support@unl.edu)
3. On Thursday we will be demonstrating how to transfer files using
Globus Connect. Before arriving at the workshop, please log in to
the
- <a href="https://www.globus.org/app/transfer" class="external-link">Globus Web App</a>
+ [Globus Web App](https://www.globus.org/app/transfer)
using your My.UNL credentials (choose *University of
Nebraska-Lincoln* from the drop down menu). Next, install the
Globus Connect Personal app on your laptop (directions for
- <a href="https://docs.globus.org/how-to/globus-connect-personal-mac/" class="external-link">Mac OS X</a>,
- <a href="https://docs.globus.org/how-to/globus-connect-personal-linux/" class="external-link">Linux</a>,
+ [Mac OS X](https://docs.globus.org/how-to/globus-connect-personal-mac/),
+ [Linux](https://docs.globus.org/how-to/globus-connect-personal-linux/),
and
- <a href="https://docs.globus.org/how-to/globus-connect-personal-windows/" class="external-link">Windows</a>)
+ [Windows](https://docs.globus.org/how-to/globus-connect-personal-windows/)
so that you can begin using Globus to transfer data to and from your
laptop.
diff --git a/content/events/2016/hcc_spring_workshop_uno.md b/content/events/2016/hcc_spring_workshop_uno.md
index ac1b9748deedd35456e08dc77c3b28ee3ae89bce..4d5f98cbb5b240a0fbcbbf9e789e1a2b1a4c9cb6 100644
--- a/content/events/2016/hcc_spring_workshop_uno.md
+++ b/content/events/2016/hcc_spring_workshop_uno.md
@@ -5,10 +5,6 @@ description = "HCC Spring Workshop UNO 2016."
**When**: 12:30 pm - 15:00 pm, March 11, 2016
-**Where**: <span style="color: rgb(91,91,90);">UNO, Criss Library Room
-249</span>
-
-**Quick
-Link**: <a href="http://jingchaozhang.github.io/2016-03-11-UNO/" class="external-link">http://jingchaozhang.github.io/2016-03-11-UNO/</a>
-
+**Where**: UNO, Criss Library Room 249
+**Quick Link**: [http://jingchaozhang.github.io/2016-03-11-UNO/](http://jingchaozhang.github.io/2016-03-11-UNO/)
\ No newline at end of file
diff --git a/content/events/2016/instructions_for_52016_allinea_workshop.md b/content/events/2016/instructions_for_52016_allinea_workshop.md
index 74df1ef2c98f8e4989321ce56c13dcee1f33ddf6..e0faf07bcd99b9541e7f89c060e92f167cccd32f 100644
--- a/content/events/2016/instructions_for_52016_allinea_workshop.md
+++ b/content/events/2016/instructions_for_52016_allinea_workshop.md
@@ -3,7 +3,9 @@ title = "Instructions for 5/20/16 Allinea Workshop"
description = "Instructions for 5/20/16 Allinea Workshop."
+++
-<span style="color: rgb(0,0,0);">When: May 20th, 1-2:30PM</span> <span style="color: rgb(0,0,0);">Where: UNL AVH 347 and UNO PKI 250</span>
+When: May 20th, 1-2:30PM
+------------------------------------------------------------
+Where: UNL AVH 347 and UNO PKI 250
-------------------------------------------------------------------------------------------------------------------------------------------
### Untar the files for the examples
@@ -34,20 +36,16 @@ these instructions to setup the Allinea client on your laptop.
First, download and install the remote client software for either
Windows or OS X
-from <a href="https://www.allinea.com/products/forge/download#remote-client" class="external-link">this page</a>.
+from [this page](https://www.allinea.com/products/forge/download#remote-client).
Start the Allinea software, and choose *Configure...* from the *Remote
Launch* dropdown menu.
-<span
-class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/configure.png" class="confluence-embedded-image confluence-content-image-border" width="300" height="78" /></span>
-
+{{< figure src="/images/configure.png" width="300" height="78" class="img-border">}}
Click the *Add* button on the new window.
-<span
-class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/add.png" class="confluence-embedded-image confluence-content-image-border" width="400" height="322" /></span>
-
+{{< figure src="/images/add.png" width="400" height="322" class="img-border">}}
To setup a connection to Crane, fill in the fields as follows:
*Connection Name: *Crane
@@ -56,8 +54,7 @@ To setup a connection to Crane, fill in the fields as follows:
It should appear similar to this:
-<span
-class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/filledfields.png" class="confluence-embedded-image confluence-content-image-border" width="500" height="306" /></span>
+{{< figure src="/images/filledfields.png" width="500" height="306" class="img-border">}}
Be sure to replace *demo02* with your HCC username.
@@ -81,14 +78,12 @@ ln -s $WORK/.allinea $HOME/.allinea
To test the connection, choose *Crane* from the *Remote Launch* menu.
-<span
-class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/remoteLaunch.png" class="confluence-embedded-image confluence-content-image-border" width="300" height="114" /></span>
+{{< figure src="/images/remoteLaunch.png" width="300" height="114" class="img-border">}}
A* Connect to Remote Host* dialog will appear and prompt for a password.
-<span
-class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/password.png" class="confluence-embedded-image confluence-content-image-border" width="500" height="310" /></span>
-
+{{< figure src="/images/password.png" width="500" height="310" class="img-border">}}
+
The login procedure is the same as for PuTTY or any other SSH program.
Enter your HCC password followed by the Duo login.
If the login was successful, you should see *Connected to:
@@ -119,14 +114,12 @@ ddt --connect
On your local machine, a pop-up box should appear prompting you to
accept the Reverse Connect request.
-<span
-class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/reverse.png" class="confluence-embedded-image confluence-content-image-border" width="450" /></span>
+{{< figure src="/images/reverse.png" width="450" class="img-border">}}
Choose *Accept.* The *Remote Launch *section should change to indicate
you are connected via tunnel, similar to:
-<span
-class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/tunnel.png" class="confluence-embedded-image confluence-thumbnail confluence-content-image-border" width="250" /></span>
+{{< figure src="/images/tunnel.png" width="250" class="img-border">}}
Once that happens, Reverse Connect is working successfully and a
debugging or profiling session can be started.
diff --git a/content/events/2016/software_carpentry_open_science_grid_workshop_unl_january_6_8_2016.md b/content/events/2016/software_carpentry_open_science_grid_workshop_unl_january_6_8_2016.md
deleted file mode 100644
index a720a572e3d62716b2cfce21578e0f6a58400f2c..0000000000000000000000000000000000000000
--- a/content/events/2016/software_carpentry_open_science_grid_workshop_unl_january_6_8_2016.md
+++ /dev/null
@@ -1,30 +0,0 @@
-+++
-title = "OSG Workshop UNL 2016"
-description = "OSG Workshop UNL 2016."
-+++
-
-**When**: January 6-8, 2016
-
-**Where**: UNL Campus, Avery Hall 119
-
-**Quick
-Link**: <a href="https://swc-osg-workshop.github.io/2016-01-06-UNL/" class="external-link">https://swc-osg-workshop.github.io/2016-01-06-UNL/</a>
-
-**Materials**
-=============
-
-**Etherpad**: no longer supported
-
-**Shell
-Lesson**: <a href="http://swc-osg-workshop.github.io/2016-01-06-UNL/novice/shell/" class="external-link">http://swc-osg-workshop.github.io/2016-01-06-UNL/novice/shell/</a>
-
-**Git
-Lesson**: <a href="https://eharstad.github.io/git-novice/" class="external-link">https://eharstad.github.io/git-novice/</a>
-
-**Python
-Lesson**: <a href="https://djw8605.github.io/python-novice-inflammation/" class="external-link">https://djw8605.github.io/python-novice-inflammation/</a>
-
-**Open Science Grid
-Lesson**: <a href="http://swc-osg-workshop.github.io/2016-01-06-UNL/novice/DHTC/" class="external-link">http://swc-osg-workshop.github.io/2016-01-06-UNL/novice/DHTC/</a>
-
-
diff --git a/content/events/2016/software_carpentry_workshop_uno_july_14_15_2016.md b/content/events/2016/software_carpentry_workshop_uno_july_14_15_2016.md
deleted file mode 100644
index 80cc6fe5207ef309256b01f18bcd2e6d6014c7e2..0000000000000000000000000000000000000000
--- a/content/events/2016/software_carpentry_workshop_uno_july_14_15_2016.md
+++ /dev/null
@@ -1,33 +0,0 @@
-+++
-title = "SWC Workshop, July 14-15, 2016"
-description = "SWC Workshop, July 14-15, 2016."
-+++
-
-
-**When**: July 14-15, 2016
-
-**Where**: UNO Campus, PKI 160
-
-**Quick
-Link**: <a href="https://npavlovikj.github.io/2016-07-14-UNO/" class="external-link">https://npavlovikj.github.io/2016-07-14-UNO/</a>
-
-**Materials**
-=============
-
-**Etherpad**: no longer supported
-
-**Shell Lesson**: <span
-style="color: rgb(24,54,145);"><a href="http://swcarpentry.github.io/shell-novice/" class="external-link">http://swcarpentry.github.io/shell-novice/</a></span>
-
-**Git Lesson**: <span
-style="color: rgb(24,54,145);"><a href="http://swcarpentry.github.io/shell-novice/" class="external-link">http://swcarpentry.github.io/git-novice/</a></span>
-
-**HCC Lesson**: [pdf](https://unl.box.com/s/p5mpahszbu4mwnxas3xzgc6e4ypnthja)
-
-**MatLab Demo**: [matlab](https://unl.box.com/s/z9ihn225txqt7s6xx3d0mfj9o5q6jc7h)
-
-**Python Lesson**: <span
-style="color: rgb(24,54,145);"><a href="https://djw8605.github.io/python-novice-inflammation/" class="external-link">https://djw8605.github.io/python-novice-inflammation/</a></span>
-
-
-
diff --git a/content/events/2016/xsede_workshop_big_data_november_2016.md b/content/events/2016/xsede_workshop_big_data_november_2016.md
deleted file mode 100644
index bfc12ed1897b24c7afd49c1e7e58fe9b6a56d238..0000000000000000000000000000000000000000
--- a/content/events/2016/xsede_workshop_big_data_november_2016.md
+++ /dev/null
@@ -1,31 +0,0 @@
-+++
-title = "XSEDE Big Data, Nov. 2016"
-description = "XSEDE Big Data, Nov. 2016."
-+++
-
-When: November 1st, 2016
-
-Where: Hardin Hall 901, UNL East Campus
-
- 3310 Holdrege St., Lincoln, 68583
-
-<a href="http://hcc.unl.edu/xsede-hpc-workshop-big-data" class="external-link">Details</a><a href="https://portal.xsede.org/course-calendar/-/training-user/class/518/session/1096" class="external-link"></a>
-
-Etherpad (no longer supported)
-
-------------------------------------------------------------------------
-
-Materials
----------
-
-| Agenda | |
-|--------|------------------------------------------------------------------------------------------------------------------------------------------------|
-| 10:00 | Welcome |
-| 10:25 | Intro to Big Data |
-| 10:45 | Hadoop |
-| 12:00 | Lunch break |
-| 1:00 | Spark intro |
-| 3:15 | A Big Big Data Platform |
-| 4:00 | Adjourn |
-
-
diff --git a/content/events/2016/xsede_workshop_openacc_december_2016.md b/content/events/2016/xsede_workshop_openacc_december_2016.md
deleted file mode 100644
index 7f72577f75c2f399b5ffd91b357aa477dc49f084..0000000000000000000000000000000000000000
--- a/content/events/2016/xsede_workshop_openacc_december_2016.md
+++ /dev/null
@@ -1,22 +0,0 @@
-+++
-title = "XSEDE OpenACC, Dec. 2016"
-description = "XSEDE OpenACC, Dec. 2016."
-+++
-
-When: December 6th, 2016
-
-Where: Animal Science C210, UNL East Campus
-
- 3940 Fair St., Lincoln, 68583
-
-<a href="https://hcc.unl.edu/xsede-hpc-workshop-openacc" class="external-link">Details</a>
-
-<a href="https://unl.box.com/s/cmz1xchbm3irqnbr0gro9ndnpyjvngwa" class="external-link">Exercises</a>
-
-Etherpad (no longer supported)
-
-
-
-------------------------------------------------------------------------
-
-