Commit a3259c2e authored by joshcarini's avatar joshcarini
Browse files

removed xsede and swc pages. replaced html code with markdown equivalents

parent 249e7a79
......@@ -18,7 +18,7 @@ Materials
Etherpad: no longer supported
Software Carpentry
Lessons: <a href="" class="external-link"></a>
Lessons: [](
Slides for Thursday intro:
......@@ -9,7 +9,7 @@ Where:  NIC Food Innovation Campus room 277
             1901 N. 21st St., Lincoln, 68588
<a href="" class="external-link">Details and Agenda</a>
[Details and Agenda](
......@@ -20,7 +20,7 @@ Slides for morning
introduction: [QIIME\_2016\_intro.pdf](
Software Carpentry Unix Shell
Lessons: <a href="" class="external-link"></a>
Lessons: [](
Slides for HCC
Overview: [2016\_Qiime.pdf](
......@@ -29,7 +29,7 @@ QIIME
slides: [QIIME\_Talk\_Oct20.pdf](
tutorial: <a href="" class="external-link"></a><a href="" class="external-link"></a>
tutorial: [](
......@@ -40,7 +40,7 @@ tutorial: <a href="" class="ext
1. To participate in this workshop, you will need to
<a href="" class="external-link">sign up for an HCC account</a>
[sign up for an HCC account](
(if you do not already have one). Please complete the account
application and [DUO two-factor authentication
......@@ -55,17 +55,17 @@ tutorial: <a href="" class="ext
and [Mac/Linux
If you have any problems logging in, please email us at
<a href="" class="external-link"></a>.
3. On Thursday we will be demonstrating how to transfer files using
Globus Connect. Before arriving at the workshop, please log in to
<a href="" class="external-link">Globus Web App</a>
[Globus Web App](
using your My.UNL credentials (choose *University of
Nebraska-Lincoln* from the drop down menu).  Next, install the
Globus Connect Personal app on your laptop (directions for
<a href="" class="external-link">Mac OS X</a>,
<a href="" class="external-link">Linux</a>,
[Mac OS X](,
<a href="" class="external-link">Windows</a>)
so that you can begin using Globus to transfer data to and from your
......@@ -5,10 +5,6 @@ description = "HCC Spring Workshop UNO 2016."
**When**: 12:30 pm - 15:00 pm, March 11, 2016
**Where**:  <span style="color: rgb(91,91,90);">UNO, Criss Library Room
Link**<a href="" class="external-link"></a>
**Where**: UNO, Criss Library Room 249
**Quick Link**[](
\ No newline at end of file
......@@ -3,7 +3,9 @@ title = "Instructions for 5/20/16 Allinea Workshop"
description = "Instructions for 5/20/16 Allinea Workshop."
<span style="color: rgb(0,0,0);">When: May 20th, 1-2:30PM</span> <span style="color: rgb(0,0,0);">Where: UNL AVH 347 and UNO PKI 250</span>
When: May 20th, 1-2:30PM
Where: UNL AVH 347 and UNO PKI 250
### Untar the files for the examples
......@@ -34,20 +36,16 @@ these instructions to setup the Allinea client on your laptop.
First, download and install the remote client software for either
Windows or OS X
from <a href="" class="external-link">this page</a>.
from [this page](
Start the Allinea software, and choose *Configure...* from the *Remote
Launch* dropdown menu.
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/configure.png" class="confluence-embedded-image confluence-content-image-border" width="300" height="78" /></span>
{{< figure src="/images/configure.png" width="300" height="78" class="img-border">}}
Click the *Add* button on the new window.
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/add.png" class="confluence-embedded-image confluence-content-image-border" width="400" height="322" /></span>
{{< figure src="/images/add.png" width="400" height="322" class="img-border">}}
To setup a connection to Crane, fill in the fields as follows:
*Connection Name:  *Crane
......@@ -56,8 +54,7 @@ To setup a connection to Crane, fill in the fields as follows:
It should appear similar to this:
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/filledfields.png" class="confluence-embedded-image confluence-content-image-border" width="500" height="306" /></span>
{{< figure src="/images/filledfields.png" width="500" height="306" class="img-border">}}
Be sure to replace *demo02* with your HCC username.
......@@ -81,13 +78,11 @@ ln -s $WORK/.allinea $HOME/.allinea
To test the connection, choose *Crane* from the *Remote Launch* menu.
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/remoteLaunch.png" class="confluence-embedded-image confluence-content-image-border" width="300" height="114" /></span>
{{< figure src="/images/remoteLaunch.png" width="300" height="114" class="img-border">}}
A* Connect to Remote Host* dialog will appear and prompt for a password.
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/password.png" class="confluence-embedded-image confluence-content-image-border" width="500" height="310" /></span>
{{< figure src="/images/password.png" width="500" height="310" class="img-border">}}
The login procedure is the same as for PuTTY or any other SSH program.
 Enter your HCC password followed by the Duo login.
......@@ -119,14 +114,12 @@ ddt --connect
On your local machine, a pop-up box should appear prompting you to
accept the Reverse Connect request.
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/reverse.png" class="confluence-embedded-image confluence-content-image-border" width="450" /></span>
{{< figure src="/images/reverse.png" width="450" class="img-border">}}
Choose *Accept.*  The *Remote Launch *section should change to indicate
you are connected via tunnel, similar to:
class="confluence-embedded-file-wrapper confluence-embedded-manual-size"><img src="/images/tunnel.png" class="confluence-embedded-image confluence-thumbnail confluence-content-image-border" width="250" /></span>
{{< figure src="/images/tunnel.png" width="250" class="img-border">}}
Once that happens, Reverse Connect is working successfully and a
debugging or profiling session can be started.
title = "OSG Workshop UNL 2016"
description = "OSG Workshop UNL 2016."
**When**: January 6-8, 2016
**Where**:  UNL Campus, Avery Hall 119
Link**<a href="" class="external-link"></a>
**Etherpad**: no longer supported
Lesson**<a href="" class="external-link"></a>
Lesson**<a href="" class="external-link"></a>
Lesson**<a href="" class="external-link"></a>
**Open Science Grid
Lesson**<a href="" class="external-link"></a>
title = "SWC Workshop, July 14-15, 2016"
description = "SWC Workshop, July 14-15, 2016."
**When**: July 14-15, 2016
**Where**: UNO Campus, PKI 160
Link**<a href="" class="external-link"></a>
**Etherpad**: no longer supported
**Shell Lesson**: <span
style="color: rgb(24,54,145);"><a href="" class="external-link"></a></span>
**Git Lesson**: <span
style="color: rgb(24,54,145);"><a href="" class="external-link"></a></span>
**HCC Lesson**: [pdf](
**MatLab Demo**: [matlab](
**Python Lesson**: <span
style="color: rgb(24,54,145);"><a href="" class="external-link"></a></span>
title = "XSEDE Big Data, Nov. 2016"
description = "XSEDE Big Data, Nov. 2016."
When:   November 1st, 2016
Where:  Hardin Hall 901, UNL East Campus
             3310 Holdrege St., Lincoln, 68583
<a href="" class="external-link">Details</a><a href="" class="external-link"></a>
Etherpad (no longer supported)
| Agenda |   |
| 10:00 | Welcome |
| 10:25 | Intro to Big Data |
| 10:45 | Hadoop |
| 12:00 | Lunch break |
| 1:00 | Spark intro |
| 3:15 | A Big Big Data Platform |
| 4:00 | Adjourn |
title = "XSEDE OpenACC, Dec. 2016"
description = "XSEDE OpenACC, Dec. 2016."
When:   December 6th, 2016
Where:  Animal Science C210, UNL East Campus
            3940 Fair St., Lincoln, 68583
<a href="" class="external-link">Details</a>
<a href="" class="external-link">Exercises</a>
Etherpad (no longer supported)
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