From ad5e2f6129abab6cadc3513f0148efbc9bff727b Mon Sep 17 00:00:00 2001
From: Caughlin Bohn <cbohn4@unl.edu>
Date: Fri, 2 Aug 2019 18:27:22 +0000
Subject: [PATCH] Added Conda commands and newer/older notes
---
.../using_anaconda_package_manager.md | 18 +++++++++++++++++-
1 file changed, 17 insertions(+), 1 deletion(-)
diff --git a/content/guides/running_applications/using_anaconda_package_manager.md b/content/guides/running_applications/using_anaconda_package_manager.md
index 7fcddd6a..14526a4f 100644
--- a/content/guides/running_applications/using_anaconda_package_manager.md
+++ b/content/guides/running_applications/using_anaconda_package_manager.md
@@ -96,6 +96,10 @@ at a minimum a name for the environment, and at least one package to
install. For example, suppose we wish to create a new environment, and
need version 1.8 of NumPy.
+{{% notice info %}}
+The `conda create` command must be run on the login node.
+{{% /notice %}}
+
{{% panel theme="info" header="Create a new environment by providing a name and package specification" %}}
{{< highlight bash >}}
conda create -n mynumpy numpy=1.8
@@ -167,6 +171,10 @@ conda install ipython
{{< /highlight >}}
{{% /panel %}}
+{{% notice info %}}
+The `conda install` command must be run on the login node.
+{{% /notice %}}
+
If you aren't currently in the environment you wish to install the
package in, add the `-n `option to specify the name.
@@ -193,6 +201,11 @@ conda remove -n mynumpy ipython
To exit an environment, we *deactivate* it.
{{% panel theme="info" header="Exit current environment" %}}
+Newer versions of anaconda:
+{{< highlight bash >}}
+conda deactivate
+{{< /highlight >}}
+Older versions of anaconda:
{{< highlight bash >}}
source deactivate
{{< /highlight >}}
@@ -254,7 +267,7 @@ Jupyter Notebook. To do so, follow the steps below, replacing
{{< /highlight >}}
4. Once you have the environment set up, deactivate it:
- {{< highlight bash >}}source deactivate{{< /highlight >}}
+ {{< highlight bash >}}conda deactivate{{< /highlight >}}
5. To make your conda environments accessible from the worker nodes,
enter the following commands:
@@ -269,6 +282,9 @@ Jupyter Notebook. To do so, follow the steps below, replacing
**Note**: Step 5 only needs to be done once. Any future created
environments will automatically be accessible from SLURM notebooks
once this is done.
+
+**Note**: For older version of anaconda, use `source deactivate` to
+deactivate the environment.
{{% /notice %}}
6. Login to JupyterHub at https://crane.unl.edu
--
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