From b35a9584f8066eb0b0d36de9570e81d08cd4074e Mon Sep 17 00:00:00 2001
From: Carrie Brown <cbrown58@unl.edu>
Date: Thu, 19 Dec 2019 23:08:16 +0000
Subject: [PATCH] Final polishing and link correction
---
content/FAQ/_index.md | 2 +-
content/_index.md | 36 +++++--------------
.../app_specific/fortran_c_on_hcc.md | 2 +-
.../app_specific/mpi_jobs_on_hcc.md | 2 +-
content/connecting/mobaxterm.md | 4 +--
content/connecting/putty.md | 2 +-
content/connecting/terminal.md | 2 +-
.../data_transfer/connect_to_cb3_irods.md | 2 +-
.../handling_data/data_transfer/cyberduck.md | 4 +--
.../data_transfer/globus_connect/_index.md | 2 +-
.../high_speed_data_transfers.md | 2 +-
content/handling_data/data_transfer/scp.md | 2 +-
.../data_transfer/using_rclone_with_hcc.md | 2 +-
content/handling_data/data_transfer/winscp.md | 4 +--
14 files changed, 25 insertions(+), 43 deletions(-)
diff --git a/content/FAQ/_index.md b/content/FAQ/_index.md
index f58b6267..a130cf58 100644
--- a/content/FAQ/_index.md
+++ b/content/FAQ/_index.md
@@ -25,7 +25,7 @@ operate it just like you would a personal machine.
Depending on your operating system, you may need to install software to
make this connection. Check out our documentation on [Connecting to HCC Clusters]
-({{< relref "/connecting/" >}}).
+({{< relref "../connecting/" >}}).
#### How do I change my password?
diff --git a/content/_index.md b/content/_index.md
index 29338843..a2e9676f 100644
--- a/content/_index.md
+++ b/content/_index.md
@@ -7,7 +7,6 @@ weight = "1"
HCC Documentation
============================
-
The Holland Computing Center supports a diverse collection of research
computing hardware. Anyone in the University of Nebraska system is
welcome to apply for an account on HCC machines.
@@ -19,7 +18,15 @@ existing resource, acquiring 'priority access'. Finally, several
machines are available via Condor for opportunistic use. This will allow
users almost immediate access, but the job is subject to preemption.
-#### [New Users Sign Up](http://hcc.unl.edu/new-user-request)
+## Getting Started
+
+To begin using HCC resources:
+
+1. [Set up your HCC account]({{< relref "accounts/" >}})
+2. [Connect to HCC Clusters]({{< relref "connecting/" >}})
+3. [Transfer data to HCC Clusters]({{< relref "handling_data/" >}})
+4. [Check software availability]({{< relref "applications/" >}})
+5. [Submit jobs on HCC Clusters]({{< relref "submitting_jobs/" >}})
Which Cluster to Use?
---------------------
@@ -34,31 +41,6 @@ Rhino has 4 AMD Interlagos CPUs (64 cores) per node, with either 192GB or 256GB
node in the default partition. For extremely large RAM needs, there is also
a 'highmem' partition with 2 x 512GB and 2 x 1TB nodes.
-User Login
-----------
-
-For Windows users, please refer to this link [For Windows Users]({{< relref "for_windows_users" >}}).
-For Mac or Linux users, please refer to this link [For Mac/Linux Users]({{< relref "for_maclinux_users">}}).
-
-**Logging into Crane or Rhino**
-
-{{< highlight bash >}}
-ssh <username>@crane.unl.edu
-{{< /highlight >}}
-
-or
-
-{{< highlight bash >}}
-ssh <username>@rhino.unl.edu
-{{< /highlight >}}
-
-Duo Security
-------------
-
-Duo two-factor authentication is **required** for access to HCC
-resources. Registration and usage of Duo security can be found in this
-section: [Setting up and using Duo]({{< relref "/accounts/setting_up_and_using_duo">}})
-
**Important Notes**
- The Crane and Rhino clusters are separate. But, they are
diff --git a/content/applications/app_specific/fortran_c_on_hcc.md b/content/applications/app_specific/fortran_c_on_hcc.md
index fe50caef..3c41ebfc 100644
--- a/content/applications/app_specific/fortran_c_on_hcc.md
+++ b/content/applications/app_specific/fortran_c_on_hcc.md
@@ -10,7 +10,7 @@ downloaded from [serial_dir.zip](/attachments/serial_dir.zip).
#### Login to a HCC Cluster
-Connect to a HCC cluster]({{< relref "/connecting/" >}}) and make a subdirectory
+Connect to a HCC cluster]({{< relref "../../connecting/" >}}) and make a subdirectory
called `serial_dir` under your `$WORK` directory.
{{< highlight bash >}}
diff --git a/content/applications/app_specific/mpi_jobs_on_hcc.md b/content/applications/app_specific/mpi_jobs_on_hcc.md
index bee11f05..18201221 100644
--- a/content/applications/app_specific/mpi_jobs_on_hcc.md
+++ b/content/applications/app_specific/mpi_jobs_on_hcc.md
@@ -10,7 +10,7 @@ scripts can be downloaded from [mpi_dir.zip](/attachments/mpi_dir.zip).
#### Login to a HCC Cluster
-Connect to a HCC cluster]({{< relref "/connecting/" >}}) and make a subdirectory
+Connect to a HCC cluster]({{< relref "../../connecting/" >}}) and make a subdirectory
and make a subdirectory called `mpi_dir` under your `$WORK` directory.
{{< highlight bash >}}
diff --git a/content/connecting/mobaxterm.md b/content/connecting/mobaxterm.md
index c3c9cac5..0bed8e41 100644
--- a/content/connecting/mobaxterm.md
+++ b/content/connecting/mobaxterm.md
@@ -1,6 +1,6 @@
+++
-title = "Using MobaXterm"
-description = "Quickstart Guide for MobaXterm"
+title = "Connecting with MobaXterm"
+description = "Connecting to and Transfering files between HCC Clusters with MobaXterm"
weight = "22"
+++
diff --git a/content/connecting/putty.md b/content/connecting/putty.md
index d804a373..966c8013 100644
--- a/content/connecting/putty.md
+++ b/content/connecting/putty.md
@@ -1,5 +1,5 @@
+++
-title = "Using PuTTY"
+title = "Connecting with PuTTY (Windows)"
description = "How to connect to HCC clusters using the PuTTY SSH client"
weight = "20"
+++
diff --git a/content/connecting/terminal.md b/content/connecting/terminal.md
index 1f4459ba..9951e798 100644
--- a/content/connecting/terminal.md
+++ b/content/connecting/terminal.md
@@ -1,7 +1,7 @@
+++
title = "Connecting with Terminal"
description = "How to connect to HCC clusters using Terminal (Mac/Linux) or Command Prompt (Windows)"
-weight = "22"
+weight = "10"
+++
##### Use of Duo two-factor authentication is **required** to access HCC resources.
diff --git a/content/handling_data/data_transfer/connect_to_cb3_irods.md b/content/handling_data/data_transfer/connect_to_cb3_irods.md
index c123dd62..1431f687 100644
--- a/content/handling_data/data_transfer/connect_to_cb3_irods.md
+++ b/content/handling_data/data_transfer/connect_to_cb3_irods.md
@@ -1,7 +1,7 @@
+++
title = "Connecting to CB3 iRODS"
description= "How to connect to the CB3 iRODS instance."
-weight = 40
+weight = 70
+++
{{% panel theme="danger" header="Sensitive and Protected Data" %}}
diff --git a/content/handling_data/data_transfer/cyberduck.md b/content/handling_data/data_transfer/cyberduck.md
index 25bf0c83..0770749b 100644
--- a/content/handling_data/data_transfer/cyberduck.md
+++ b/content/handling_data/data_transfer/cyberduck.md
@@ -1,7 +1,7 @@
+++
-title = "File Transfer with CyberDuck (MacOS/Windows)"
+title = "File Transfer with CyberDuck"
description = "Transfering data to and from HCC clusters with the Cyberduck SCP Client"
-weight = "22"
+weight = "30"
+++
---
diff --git a/content/handling_data/data_transfer/globus_connect/_index.md b/content/handling_data/data_transfer/globus_connect/_index.md
index 61830c40..8191bd1b 100644
--- a/content/handling_data/data_transfer/globus_connect/_index.md
+++ b/content/handling_data/data_transfer/globus_connect/_index.md
@@ -1,7 +1,7 @@
+++
title = "Globus Connect"
description = "Globus Connect overview"
-weight = 20
+weight = 5
+++
<a href="https://www.globus.org/globus-connect" class="external-link">Globus Connect</a> is
diff --git a/content/handling_data/data_transfer/high_speed_data_transfers.md b/content/handling_data/data_transfer/high_speed_data_transfers.md
index 922eb4b4..07c5161a 100644
--- a/content/handling_data/data_transfer/high_speed_data_transfers.md
+++ b/content/handling_data/data_transfer/high_speed_data_transfers.md
@@ -1,7 +1,7 @@
+++
title = "High Speed Data Transfers"
description = "How to transfer files directly from the transfer servers"
-weight = 10
+weight = 40
+++
Crane, Rhino, and Attic each have a dedicated transfer server with
diff --git a/content/handling_data/data_transfer/scp.md b/content/handling_data/data_transfer/scp.md
index ab6c7636..f69d8cab 100644
--- a/content/handling_data/data_transfer/scp.md
+++ b/content/handling_data/data_transfer/scp.md
@@ -1,7 +1,7 @@
+++
title = "File Transfer with scp"
description = "Transfering data to and from HCC clusters with the scp command"
-weight = "22"
+weight = "10"
+++
## Using the SCP command
diff --git a/content/handling_data/data_transfer/using_rclone_with_hcc.md b/content/handling_data/data_transfer/using_rclone_with_hcc.md
index 02fc1c26..a81a0899 100644
--- a/content/handling_data/data_transfer/using_rclone_with_hcc.md
+++ b/content/handling_data/data_transfer/using_rclone_with_hcc.md
@@ -1,7 +1,7 @@
+++
title = "Using Rclone for File Transfer"
description = "How to use Rclone with HCC"
-weight =30
+weight =60
+++
Rclone is an open source file transfer tool to make transfering files to and from various cloud resources such as Box, Amazon S3, Microsoft OneDrive, and Google Cloud Storage and your local machine a simpler task. Guides on how to set up a variety of resources to transfer to and from can be found at [rclone's webpage](https://rclone.org/).
diff --git a/content/handling_data/data_transfer/winscp.md b/content/handling_data/data_transfer/winscp.md
index cd894939..317dd824 100644
--- a/content/handling_data/data_transfer/winscp.md
+++ b/content/handling_data/data_transfer/winscp.md
@@ -1,6 +1,6 @@
+++
-title = "For Windows Users"
-description = "Quickstart for Windows Users"
+title = "File Transfer with WinSCP"
+description = "Transfering Files to and from HCC Clusters using the WinSCP Client"
weight = "20"
+++
--
GitLab