diff --git a/content/Applications/Application_Specific_Guides/fortran_c_on_hcc.md b/content/Applications/Application_Specific_Guides/fortran_c_on_hcc.md index 1ed6a62ac0fa388134f3596cff1b4e340946d33a..5d5eab9caa112b552633b855b03c749e214d9b12 100644 --- a/content/Applications/Application_Specific_Guides/fortran_c_on_hcc.md +++ b/content/Applications/Application_Specific_Guides/fortran_c_on_hcc.md @@ -10,8 +10,8 @@ downloaded from [serial_dir.zip](/attachments/serial_dir.zip). #### Login to a HCC Cluster -Log in to a HCC cluster through PuTTY ([For Windows Users]({{< relref "/quickstarts/connecting/for_windows_users">}})) or Terminal ([For Mac/Linux -Users]({{< relref "/quickstarts/connecting/for_maclinux_users">}})) and make a subdirectory called `serial_dir` under the `$WORK` directory. +Log in to a HCC cluster through PuTTY ([For Windows Users]({{< relref "/Quickstarts/connecting/for_windows_users">}})) or Terminal ([For Mac/Linux +Users]({{< relref "/Quickstarts/connecting/for_maclinux_users">}})) and make a subdirectory called `serial_dir` under the `$WORK` directory. {{< highlight bash >}} $ cd $WORK diff --git a/content/Applications/Application_Specific_Guides/mpi_jobs_on_hcc.md b/content/Applications/Application_Specific_Guides/mpi_jobs_on_hcc.md index b2aaedbd2549fea480f99ed280e5fb4cbb6a4772..399c7f0f2d6deafa5fbe8b28cad62c7e013e8a5a 100644 --- a/content/Applications/Application_Specific_Guides/mpi_jobs_on_hcc.md +++ b/content/Applications/Application_Specific_Guides/mpi_jobs_on_hcc.md @@ -10,8 +10,8 @@ scripts can be downloaded from [mpi_dir.zip](/attachments/mpi_dir.zip). #### Login to a HCC Cluster -Log in to a HCC cluster through PuTTY ([For Windows Users]({{< relref "/quickstarts/connecting/for_windows_users">}})) or Terminal ([For Mac/Linux -Users]({{< relref "/quickstarts/connecting/for_maclinux_users">}})) and make a subdirectory called `mpi_dir` under the `$WORK` directory. +Log in to a HCC cluster through PuTTY ([For Windows Users]({{< relref "/Quickstarts/connecting/for_windows_users">}})) or Terminal ([For Mac/Linux +Users]({{< relref "/Quickstarts/connecting/for_maclinux_users">}})) and make a subdirectory called `mpi_dir` under the `$WORK` directory. {{< highlight bash >}} $ cd $WORK diff --git a/content/Connecting/linux/linux_file_permissions.md b/content/Connecting/linux/linux_file_permissions.md index 18e63a5996c8c6786a49dfd258e61fe593496635..9a3d709945b45a42efe74850471671a34e7252e8 100644 --- a/content/Connecting/linux/linux_file_permissions.md +++ b/content/Connecting/linux/linux_file_permissions.md @@ -13,7 +13,7 @@ weight = 20 Use your local terminal to connect to a cluster, or open a new terminal window on [Crane](https://crane.unl.edu). -Click [here](https://hcc.unl.edu/docs/quickstarts/connecting/) if you need help connecting to a cluster +Click [here](https://hcc.unl.edu/docs/Quickstarts/connecting/) if you need help connecting to a cluster with a local terminal. Click [here](https://hcc.unl.edu/docs/guides/running_applications/jupyter/) if you need diff --git a/content/Data_Storage/preventing_file_loss.md b/content/Data_Storage/preventing_file_loss.md index d264185f2511a8af15ae13e82857a2f9cd25ab23..ad3e954ff7c6d695a27a0c95927de3975a548b78 100644 --- a/content/Data_Storage/preventing_file_loss.md +++ b/content/Data_Storage/preventing_file_loss.md @@ -30,7 +30,7 @@ Connect]({{< relref "/Data_Transfer/globus_connect" >}}) or an SCP client, such as <a href="https://cyberduck.io/" class="external-link">Cyberduck</a> or <a href="https://winscp.net/eng/index.php" class="external-link">WinSCP</a>. For help setting up an SCP client, check out our [Quick Start -Guides]({{< relref "/quickstarts" >}}). +Guides]({{< relref "/Quickstarts" >}}). For those worried about personal hard drive crashes, UNL offers <a href="http://nsave.unl.edu/" class="external-link">the backup service NSave</a>. diff --git a/content/Events/2013/HCC_Supercomputing_Symposium_2013.md b/content/Events/2013/HCC_Supercomputing_Symposium_2013.md index 6e1dbc7e1fe69a97f08832003df31c645d1390e7..34a8124bb3e11eb4861e177cfb275059e6615ec0 100644 --- a/content/Events/2013/HCC_Supercomputing_Symposium_2013.md +++ b/content/Events/2013/HCC_Supercomputing_Symposium_2013.md @@ -8,7 +8,7 @@ The morning sessions will be interactive – attendees should bring a laptop if | Time | Title | Description | |---------|-------------------------------------------------------|------------------------------------------------------------------| -| 9 - 10am| Getting started at HCC | HCC 101 (Linux Primer, Job submission) [Quick Start Guides](https://hcc.unl.edu/docs/quickstarts/) | +| 9 - 10am| Getting started at HCC | HCC 101 (Linux Primer, Job submission) [Quick Start Guides](https://hcc.unl.edu/docs/Quickstarts/) | | 10 - 11am | Job management | Creating and deploying parallel jobs at HCC, OSG [Submitting Jobs](https://hcc.unl.edu/docs/guides/submitting_jobs/) | | 11 - 11:45am | HCC Open Lab | Presentations and help from HCC staff | | 12 - 1pm | LUNCH lecture with UNIT | Carl Lundstedt: How Big Data Allows Us to Investigate the Smallest Things | @@ -17,7 +17,7 @@ The morning sessions will be interactive – attendees should bring a laptop if 1. <span style="line-height: 1.4285715;">Getting Started at HCC (9-10am</span> 1. [Getting an account at HCC](https://hcc.unl.edu/new-user-request) - 2. Logging into HCC resources for [windows](https://hcc.unl.edu/docs/quickstarts/connecting/for_windows_users/) or [Mac/Linux Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/) + 2. Logging into HCC resources for [windows](https://hcc.unl.edu/docs/Quickstarts/connecting/for_windows_users/) or [Mac/Linux Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_maclinux_users/) 3. Basic Linux commands 4. [Transferring files to HCC](https://hcc.unl.edu/docs/guides/handling_data/) 2. Job Management (10-11am) diff --git a/content/Events/2013/hcc_condor_workshop_2013.md b/content/Events/2013/hcc_condor_workshop_2013.md index 5b70a75a2d9d6690a712743dc732e959e833c0b0..1561d15be8651ee3de2eccfdb42744c90a5482d7 100644 --- a/content/Events/2013/hcc_condor_workshop_2013.md +++ b/content/Events/2013/hcc_condor_workshop_2013.md @@ -17,8 +17,8 @@ Workshop presentation slides Password for all demo accounts is **HCC\_condor2013**. Replace `<group name>` with `demo` and `<username>` with `demoXX` (e.g. `demo01`). -- Get started with [For Windows Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_windows_users/) - or [For Mac/Linux Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/). +- Get started with [For Windows Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_windows_users/) + or [For Mac/Linux Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_maclinux_users/). - Sample code for Fortran/C on HCC: <[serial\_dir.zip](https://unl.box.com/s/khkpt68pe3k0lu2ythn9kzjeva40itdd)> - Sample code for Condor on HCC: @@ -40,8 +40,8 @@ Password for all demo accounts is **HCC\_matlab2013**. Replace `<group name>` with `demo` and `<username>` with `demoXX` (e.g. `demo01`). -- Get started with [For Windows Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_windows_users/) - or [For Mac/Linux Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/). +- Get started with [For Windows Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_windows_users/) + or [For Mac/Linux Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_maclinux_users/). - Hands On: [MATLAB on HCC](https://hcc.unl.edu/docs/guides/submitting_jobs/submitting_matlab_jobs/) - Sample code for MATLAB on HCC: <[matlab\_dir.zip](https://unl.box.com/s/u19fy7cjeswfl1wi7h1nkeeie8gl3z90)> diff --git a/content/Events/2013/hcc_matlab_workshop_2013.md b/content/Events/2013/hcc_matlab_workshop_2013.md index 6ef348f6d65835a80c75586b677a9759e6294241..cf2df3c8e499f5a56b4cda255245e36804c1612c 100644 --- a/content/Events/2013/hcc_matlab_workshop_2013.md +++ b/content/Events/2013/hcc_matlab_workshop_2013.md @@ -20,8 +20,8 @@ Password for all demo accounts is **HCC\_matlab2013**. Replace `<group name>` with `demo` and `<username>` with `demoXX` (e.g. `demo01`). -- Get started with [For Windows Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_windows_users/) - or [For Mac/Linux Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/). +- Get started with [For Windows Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_windows_users/) + or [For Mac/Linux Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_maclinux_users/). - Hands On: [MATLAB on HCC](https://hcc.unl.edu/docs/guides/submitting_jobs/submitting_matlab_jobs/) - Sample code for MATLAB on HCC: <[matlab\_dir.zip](https://unl.box.com/s/u19fy7cjeswfl1wi7h1nkeeie8gl3z90)> diff --git a/content/Events/2013/hcc_mpi_workshop_2013.md b/content/Events/2013/hcc_mpi_workshop_2013.md index 0f8b72c7cdcb266d98dd45401316cfb937ec4e26..02dc70cf7b6a6536d7573e743cd1748f78caafd1 100644 --- a/content/Events/2013/hcc_mpi_workshop_2013.md +++ b/content/Events/2013/hcc_mpi_workshop_2013.md @@ -13,8 +13,8 @@ Workshop presentation slides <[mpi\_workshop.pdf](https://unl.box.com/s/7rufq Password for all demo accounts is **HCC\_mpi2013**. Replace `<group name>` with `demo` and `<username>` with `demoXX` (e.g. `demo01`). -- Get started with [For Windows Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_windows_users/) - or [For Mac/Linux Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/). +- Get started with [For Windows Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_windows_users/) + or [For Mac/Linux Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_maclinux_users/). - Sample code for Fortran/C on HCC: <[serial\_dir.zip](https://unl.box.com/s/khkpt68pe3k0lu2ythn9kzjeva40itdd)> - Sample code for MPI on HCC: diff --git a/content/Events/2016/hcc_qiime_workshop_2016.md b/content/Events/2016/hcc_qiime_workshop_2016.md index 5b97b54595210a70b04eee24f9a081c2972eeea6..a7662bd5599b00c5b7cc793b37ddf6141e09617f 100644 --- a/content/Events/2016/hcc_qiime_workshop_2016.md +++ b/content/Events/2016/hcc_qiime_workshop_2016.md @@ -51,9 +51,9 @@ tutorial: [http://bioinformatics.unl.edu/qiime_tutorial.pdf](http://bioinformat Thursday, please arrive at the workshop by 8:30AM to get help. 2. Once you have your HCC account and DUO set up, please make sure that you are able to log into the HCC clusters (instructions for [Windows - Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_windows_users/) + Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_windows_users/) and [Mac/Linux - Users](https://hcc.unl.edu/docs/quickstarts/connecting/for_maclinux_users/). + Users](https://hcc.unl.edu/docs/Quickstarts/connecting/for_maclinux_users/). If you have any problems logging in, please email us at [hcc-support@unl.edu](mailto:hcc-support@unl.edu) 3. On Thursday we will be demonstrating how to transfer files using diff --git a/content/Events/2017/unk_linear_algebra_feb_28th_2017.md b/content/Events/2017/unk_linear_algebra_feb_28th_2017.md index a81c2fd9ff6cdd0386fce2009cdb6c9672b99caf..6be6caaf9d5e47f1e4804cc739f73b0cbb8aed56 100644 --- a/content/Events/2017/unk_linear_algebra_feb_28th_2017.md +++ b/content/Events/2017/unk_linear_algebra_feb_28th_2017.md @@ -48,7 +48,7 @@ The link above is no longer available. If you wish to use a terminal in your bro **Linux Commands Reference List:** ---------------------------------- -https://hcc.unl.edu/docs/quickstarts/connecting/basic_linux_commands/ +https://hcc.unl.edu/docs/Quickstarts/connecting/basic_linux_commands/ **To run MATLAB interactively:** -------------------------------- diff --git a/content/Events/2017/unl_r_for_biologists_class_march_8_2017.md b/content/Events/2017/unl_r_for_biologists_class_march_8_2017.md index 8a25c915cad2b0ca3b2a51df00ae1ddee070dd02..1be4d7eb409d9d83096772ff40232b603ec858e4 100644 --- a/content/Events/2017/unl_r_for_biologists_class_march_8_2017.md +++ b/content/Events/2017/unl_r_for_biologists_class_march_8_2017.md @@ -47,7 +47,7 @@ found here: [For Mac/Linux Users](https://cyberduck.io/) **Linux Commands Reference List:** -[https://hcc.unl.edu/docs/quickstarts/connecting/basic_linux_commands/](https://hcc.unl.edu/docs/quickstarts/connecting/basic_linux_commands/) +[https://hcc.unl.edu/docs/Quickstarts/connecting/basic_linux_commands/](https://hcc.unl.edu/docs/Quickstarts/connecting/basic_linux_commands/) diff --git a/content/Submitting_Jobs/condor_jobs_on_hcc.md b/content/Submitting_Jobs/condor_jobs_on_hcc.md index 4a2ab4ea601d19fd3fc84b4861002914126f937d..1b9db0aeaee983dd4fd7279f363882337f4a7175 100644 --- a/content/Submitting_Jobs/condor_jobs_on_hcc.md +++ b/content/Submitting_Jobs/condor_jobs_on_hcc.md @@ -10,7 +10,7 @@ can be downloaded from [condor_dir.zip](/attachments/3178558.zip). #### Login to a HCC Cluster -Log in to a HCC cluster through PuTTY ([For Windows Users]({{< relref "/quickstarts/connecting/for_windows_users">}})) or Terminal ([For Mac/Linux Users]({{< relref "/quickstarts/connecting/for_maclinux_users">}})) and make a subdirectory called `condor_dir` under the `$WORK` directory. In the subdirectory `condor_dir`, create job subdirectories that host the input data files. Here we create two job subdirectories, `job_0` and `job_1`, and put a data file (`data.dat`) in each subdirectory. The data file in `job_0` has a column of data listing the integers from 1 to 5. The data file in `job_1` has a integer list from 6 to 10. +Log in to a HCC cluster through PuTTY ([For Windows Users]({{< relref "/Quickstarts/connecting/for_windows_users">}})) or Terminal ([For Mac/Linux Users]({{< relref "/Quickstarts/connecting/for_maclinux_users">}})) and make a subdirectory called `condor_dir` under the `$WORK` directory. In the subdirectory `condor_dir`, create job subdirectories that host the input data files. Here we create two job subdirectories, `job_0` and `job_1`, and put a data file (`data.dat`) in each subdirectory. The data file in `job_0` has a column of data listing the integers from 1 to 5. The data file in `job_1` has a integer list from 6 to 10. {{< highlight bash >}} $ cd $WORK diff --git a/content/_index.md b/content/_index.md index 7aa654ad3bc043ae810821f4dfed7fa5967a8cc6..748ac1819afdb160d489d40aa68380acff8fae6f 100644 --- a/content/_index.md +++ b/content/_index.md @@ -21,7 +21,7 @@ users almost immediate access, but the job is subject to preemption. #### [New Users Sign Up](http://hcc.unl.edu/new-user-request) -#### [Quick Start Guides](/quickstarts) +#### [Quick Start Guides](/Quickstarts) Which Cluster to Use? ---------------------