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The following is a categorized list of bioinformatics tools available on HCC. Each page contains summary of the tool, information about the HCC resources that have the specific tool, links to user documentation, as well as example SLURM submit scripts.
More detailed information about submitting SLURM jobs and checking job status on HCC can be found [here](../../submitting_jobs)
More detailed information about submitting SLURM jobs and checking job status on HCC can be found [here]({{< relref "/submitting_jobs/_index.md" >}}).
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HCC hosts multiple databases (BLAST, KEGG, PANTHER, InterProScan), genome files, short read aligned indices etc. on Crane.
HCC hosts multiple databases (BLAST, KEGG, PANTHER, InterProScan), genome files, short read aligned indices etc. on Crane and Rhino.
In order to use these resources, the "**biodata**" module needs to be loaded first.
For how to load module, please check [Module Commands]({{< relref "/applications/modules/_index.md" >}}).
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......@@ -12,11 +12,11 @@ Usually it is convenient to upload and download files between your personal comp
and the HCC supercomputers through a Graphic User Interface (GUI).
Download and install the third party application **WinSCP**
to connect the file systems between your personal computer and the HCC supercomputers.
Below is a step-by-step installation guide. Here we use the HCC cluster **Tusker**
for demonstration. To use the **Crane** cluster, replace `tusker.unl.edu`
with `crane.unl.edu`.
Below is a step-by-step installation guide. Here we use the HCC cluster **Crane**
for demonstration. To use the **Rhino** cluster, replace `crane.unl.edu`
with `rhino.unl.edu`.
1. On the first screen, type `tusker.unl.edu` for Host name, enter your
1. On the first screen, type `crane.unl.edu` for Host name, enter your
HCC account username and password for User name and Password. Then
click on **Login**.
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