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<span id="title-text"> HCC-DOCS : Organisms </span>
===================================================

Created by <span class="author"> Adam Caprez</span> on Mar 10, 2016

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Arabidopsis\_thaliana</span>

| Short Name                                   | Source | Build  | Type                       |
|----------------------------------------------|--------|--------|----------------------------|
| ARABIDOPSIS\_THALIANA\_NCBI\_TAIR10          | NCBI   | TAIR10 | Main Directory             |
| ATH                                          | NCBI   | TAIR10 | Main Directory             |
| BOWTIE\_ARABIDOPSIS\_THALIANA\_NCBI\_TAIR10  | NCBI   | TAIR10 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_ATH                                  | NCBI   | TAIR10 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_ARABIDOPSIS\_THALIANA\_NCBI\_TAIR10 | NCBI   | TAIR10 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_ATH                                 | NCBI   | TAIR10 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_ARABIDOPSIS\_THALIANA\_NCBI\_TAIR10     | NCBI   | TAIR10 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_ATH                                     | NCBI   | TAIR10 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_ARABIDOPSIS\_THALIANA\_NCBI\_TAIR10     | NCBI   | TAIR10 | Chromosome Fasta Files     |
| CHR\_ATH                                     | NCBI   | TAIR10 | Chromosome Fasta Files     |
| FAIDX\_ARABIDOPSIS\_THALIANA\_NCBI\_TAIR10   | NCBI   | TAIR10 | Fasta Index .fai File      |
| FAIDX\_ATH                                   | NCBI   | TAIR10 | Fasta Index .fai File      |
| GENOME\_ARABIDOPSIS\_THALIANA\_NCBI\_TAIR10  | NCBI   | TAIR10 | Genome Fasta File          |
| GENOME\_ATH                                  | NCBI   | TAIR10 | Genome Fasta File          |
| PICARD\_ARABIDOPSIS\_THALIANA\_NCBI\_TAIR10  | NCBI   | TAIR10 | Picard .dict File          |
| PICARD\_ATH                                  | NCBI   | TAIR10 | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Bacillus\_cereus\_ATCC\_10987</span>

| Short Name                                                 | Source | Build      | Type                       |
|------------------------------------------------------------|--------|------------|----------------------------|
| BACILLUS\_CEREUS\_ATCC\_10987                              | NCBI   | 2004-02-13 | Main Directory             |
| BACILLUS\_CEREUS\_ATCC\_10987\_NCBI\_2004\_02\_13          | NCBI   | 2004-02-13 | Main Directory             |
| BOWTIE\_BACILLUS\_CEREUS\_ATCC\_10987                      | NCBI   | 2004-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_BACILLUS\_CEREUS\_ATCC\_10987\_NCBI\_2004\_02\_13  | NCBI   | 2004-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_BACILLUS\_CEREUS\_ATCC\_10987                     | NCBI   | 2004-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_BACILLUS\_CEREUS\_ATCC\_10987\_NCBI\_2004\_02\_13 | NCBI   | 2004-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_BACILLUS\_CEREUS\_ATCC\_10987                         | NCBI   | 2004-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_BACILLUS\_CEREUS\_ATCC\_10987\_NCBI\_2004\_02\_13     | NCBI   | 2004-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_BACILLUS\_CEREUS\_ATCC\_10987                         | NCBI   | 2004-02-13 | Chromosome Fasta Files     |
| CHR\_BACILLUS\_CEREUS\_ATCC\_10987\_NCBI\_2004\_02\_13     | NCBI   | 2004-02-13 | Chromosome Fasta Files     |
| FAIDX\_BACILLUS\_CEREUS\_ATCC\_10987                       | NCBI   | 2004-02-13 | Fasta Index .fai File      |
| FAIDX\_BACILLUS\_CEREUS\_ATCC\_10987\_NCBI\_2004\_02\_13   | NCBI   | 2004-02-13 | Fasta Index .fai File      |
| GENOME\_BACILLUS\_CEREUS\_ATCC\_10987                      | NCBI   | 2004-02-13 | Genome Fasta File          |
| GENOME\_BACILLUS\_CEREUS\_ATCC\_10987\_NCBI\_2004\_02\_13  | NCBI   | 2004-02-13 | Genome Fasta File          |
| PICARD\_BACILLUS\_CEREUS\_ATCC\_10987                      | NCBI   | 2004-02-13 | Picard .dict File          |
| PICARD\_BACILLUS\_CEREUS\_ATCC\_10987\_NCBI\_2004\_02\_13  | NCBI   | 2004-02-13 | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Bacillus\_subtilis\_168</span>

| Short Name                                     | Source  | Build | Type                       |
|------------------------------------------------|---------|-------|----------------------------|
| BACILLUS\_SUBTILIS\_168\_ENSEMBL\_EB2          | Ensembl | EB2   | Main Directory             |
| BOWTIE\_BACILLUS\_SUBTILIS\_168\_ENSEMBL\_EB2  | Ensembl | EB2   | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_BSUBT\_168                             | Ensembl | EB2   | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_BACILLUS\_SUBTILIS\_168\_ENSEMBL\_EB2 | Ensembl | EB2   | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_BSUBT\_168                            | Ensembl | EB2   | Bwa\|Bowtie\|Bowtie2 Index |
| BSUBT\_168                                     | Ensembl | EB2   | Main Directory             |
| BWA\_BACILLUS\_SUBTILIS\_168\_ENSEMBL\_EB2     | Ensembl | EB2   | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_BSUBT\_168                                | Ensembl | EB2   | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_BACILLUS\_SUBTILIS\_168\_ENSEMBL\_EB2     | Ensembl | EB2   | Chromosome Fasta Files     |
| CHR\_BSUBT\_168                                | Ensembl | EB2   | Chromosome Fasta Files     |
| FAIDX\_BACILLUS\_SUBTILIS\_168\_ENSEMBL\_EB2   | Ensembl | EB2   | Fasta Index .fai File      |
| FAIDX\_BSUBT\_168                              | Ensembl | EB2   | Fasta Index .fai File      |
| GENOME\_BACILLUS\_SUBTILIS\_168\_ENSEMBL\_EB2  | Ensembl | EB2   | Genome Fasta File          |
| GENOME\_BSUBT\_168                             | Ensembl | EB2   | Genome Fasta File          |
| PICARD\_BACILLUS\_SUBTILIS\_168\_ENSEMBL\_EB2  | Ensembl | EB2   | Picard .dict File          |
| PICARD\_BSUBT\_168                             | Ensembl | EB2   | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Bos\_taurus</span>

| Short Name                               | Source  | Build      | Type                       |
|------------------------------------------|---------|------------|----------------------------|
| BOS\_TAURUS\_ENSEMBL\_UMD\_3\_1          | Ensembl | UMD\_3.1   | Main Directory             |
| BOS\_TAURUS\_ENSEMBL\_UMD3\_1            | Ensembl | UMD3.1     | Main Directory             |
| BOS\_TAURUS\_NCBI\_UMD\_3\_1             | NCBI    | UMD\_3.1   | Main Directory             |
| BOS\_TAURUS\_NCBI\_UMD\_3\_1\_1          | NCBI    | UMD\_3.1.1 | Main Directory             |
| BOWTIE\_BOS\_TAURUS\_ENSEMBL\_UMD\_3\_1  | Ensembl | UMD\_3.1   | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_BOS\_TAURUS\_ENSEMBL\_UMD3\_1    | Ensembl | UMD3.1     | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_BOS\_TAURUS\_NCBI\_UMD\_3\_1     | NCBI    | UMD\_3.1   | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_BOS\_TAURUS\_NCBI\_UMD\_3\_1\_1  | NCBI    | UMD\_3.1.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_COW                              | NCBI    | UMD\_3.1   | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_BOS\_TAURUS\_ENSEMBL\_UMD\_3\_1 | Ensembl | UMD\_3.1   | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_BOS\_TAURUS\_ENSEMBL\_UMD3\_1   | Ensembl | UMD3.1     | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_BOS\_TAURUS\_NCBI\_UMD\_3\_1    | NCBI    | UMD\_3.1   | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_BOS\_TAURUS\_NCBI\_UMD\_3\_1\_1 | NCBI    | UMD\_3.1.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_COW                             | NCBI    | UMD\_3.1   | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_BOS\_TAURUS\_ENSEMBL\_UMD\_3\_1     | Ensembl | UMD\_3.1   | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_BOS\_TAURUS\_ENSEMBL\_UMD3\_1       | Ensembl | UMD3.1     | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_BOS\_TAURUS\_NCBI\_UMD\_3\_1        | NCBI    | UMD\_3.1   | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_BOS\_TAURUS\_NCBI\_UMD\_3\_1\_1     | NCBI    | UMD\_3.1.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_COW                                 | NCBI    | UMD\_3.1   | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_BOS\_TAURUS\_ENSEMBL\_UMD\_3\_1     | Ensembl | UMD\_3.1   | Chromosome Fasta Files     |
| CHR\_BOS\_TAURUS\_ENSEMBL\_UMD3\_1       | Ensembl | UMD3.1     | Chromosome Fasta Files     |
| CHR\_BOS\_TAURUS\_NCBI\_UMD\_3\_1        | NCBI    | UMD\_3.1   | Chromosome Fasta Files     |
| CHR\_BOS\_TAURUS\_NCBI\_UMD\_3\_1\_1     | NCBI    | UMD\_3.1.1 | Chromosome Fasta Files     |
| CHR\_COW                                 | NCBI    | UMD\_3.1   | Chromosome Fasta Files     |
| COW                                      | NCBI    | UMD\_3.1   | Main Directory             |
| FAIDX\_BOS\_TAURUS\_ENSEMBL\_UMD\_3\_1   | Ensembl | UMD\_3.1   | Fasta Index .fai File      |
| FAIDX\_BOS\_TAURUS\_ENSEMBL\_UMD3\_1     | Ensembl | UMD3.1     | Fasta Index .fai File      |
| FAIDX\_BOS\_TAURUS\_NCBI\_UMD\_3\_1      | NCBI    | UMD\_3.1   | Fasta Index .fai File      |
| FAIDX\_BOS\_TAURUS\_NCBI\_UMD\_3\_1\_1   | NCBI    | UMD\_3.1.1 | Fasta Index .fai File      |
| FAIDX\_COW                               | NCBI    | UMD\_3.1   | Fasta Index .fai File      |
| GENOME\_BOS\_TAURUS\_ENSEMBL\_UMD\_3\_1  | Ensembl | UMD\_3.1   | Genome Fasta File          |
| GENOME\_BOS\_TAURUS\_ENSEMBL\_UMD3\_1    | Ensembl | UMD3.1     | Genome Fasta File          |
| GENOME\_BOS\_TAURUS\_NCBI\_UMD\_3\_1     | NCBI    | UMD\_3.1   | Genome Fasta File          |
| GENOME\_BOS\_TAURUS\_NCBI\_UMD\_3\_1\_1  | NCBI    | UMD\_3.1.1 | Genome Fasta File          |
| GENOME\_COW                              | NCBI    | UMD\_3.1   | Genome Fasta File          |
| PICARD\_BOS\_TAURUS\_ENSEMBL\_UMD\_3\_1  | Ensembl | UMD\_3.1   | Picard .dict File          |
| PICARD\_BOS\_TAURUS\_ENSEMBL\_UMD3\_1    | Ensembl | UMD3.1     | Picard .dict File          |
| PICARD\_BOS\_TAURUS\_NCBI\_UMD\_3\_1     | NCBI    | UMD\_3.1   | Picard .dict File          |
| PICARD\_BOS\_TAURUS\_NCBI\_UMD\_3\_1\_1  | NCBI    | UMD\_3.1.1 | Picard .dict File          |
| PICARD\_COW                              | NCBI    | UMD\_3.1   | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Caenorhabditis\_elegans</span>

| Short Name                                    | Source | Build | Type                       |
|-----------------------------------------------|--------|-------|----------------------------|
| BOWTIE\_CAENORHABDITIS\_ELEGANS\_NCBI\_WS195  | NCBI   | WS195 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_CELEGANS                              | NCBI   | WS195 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_CAENORHABDITIS\_ELEGANS\_NCBI\_WS195 | NCBI   | WS195 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_CELEGANS                             | NCBI   | WS195 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_CAENORHABDITIS\_ELEGANS\_NCBI\_WS195     | NCBI   | WS195 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_CELEGANS                                 | NCBI   | WS195 | Bwa\|Bowtie\|Bowtie2 Index |
| CAENORHABDITIS\_ELEGANS\_NCBI\_WS195          | NCBI   | WS195 | Main Directory             |
| CELEGANS                                      | NCBI   | WS195 | Main Directory             |
| CHR\_CAENORHABDITIS\_ELEGANS\_NCBI\_WS195     | NCBI   | WS195 | Chromosome Fasta Files     |
| CHR\_CELEGANS                                 | NCBI   | WS195 | Chromosome Fasta Files     |
| FAIDX\_CAENORHABDITIS\_ELEGANS\_NCBI\_WS195   | NCBI   | WS195 | Fasta Index .fai File      |
| FAIDX\_CELEGANS                               | NCBI   | WS195 | Fasta Index .fai File      |
| GENOME\_CAENORHABDITIS\_ELEGANS\_NCBI\_WS195  | NCBI   | WS195 | Genome Fasta File          |
| GENOME\_CELEGANS                              | NCBI   | WS195 | Genome Fasta File          |
| PICARD\_CAENORHABDITIS\_ELEGANS\_NCBI\_WS195  | NCBI   | WS195 | Picard .dict File          |
| PICARD\_CELEGANS                              | NCBI   | WS195 | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Canis\_familiaris</span>

| Short Name                                  | Source | Build    | Type                       |
|---------------------------------------------|--------|----------|----------------------------|
| BOWTIE\_CANIS\_FAMILIARIS\_NCBI\_BUILD3\_1  | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_DOG                                 | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_CANIS\_FAMILIARIS\_NCBI\_BUILD3\_1 | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_DOG                                | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_CANIS\_FAMILIARIS\_NCBI\_BUILD3\_1     | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_DOG                                    | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| CANIS\_FAMILIARIS\_NCBI\_BUILD3\_1          | NCBI   | build3.1 | Main Directory             |
| CHR\_CANIS\_FAMILIARIS\_NCBI\_BUILD3\_1     | NCBI   | build3.1 | Chromosome Fasta Files     |
| CHR\_DOG                                    | NCBI   | build3.1 | Chromosome Fasta Files     |
| DOG                                         | NCBI   | build3.1 | Main Directory             |
| FAIDX\_CANIS\_FAMILIARIS\_NCBI\_BUILD3\_1   | NCBI   | build3.1 | Fasta Index .fai File      |
| FAIDX\_DOG                                  | NCBI   | build3.1 | Fasta Index .fai File      |
| GENOME\_CANIS\_FAMILIARIS\_NCBI\_BUILD3\_1  | NCBI   | build3.1 | Genome Fasta File          |
| GENOME\_DOG                                 | NCBI   | build3.1 | Genome Fasta File          |
| PICARD\_CANIS\_FAMILIARIS\_NCBI\_BUILD3\_1  | NCBI   | build3.1 | Picard .dict File          |
| PICARD\_DOG                                 | NCBI   | build3.1 | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Danio\_rerio</span>

| Short Name                       | Source | Build | Type                       |
|----------------------------------|--------|-------|----------------------------|
| BOWTIE\_DANIO\_RERIO             | NCBI   | Zv9   | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_DANIO\_RERIO\_NCBI\_ZV9  | NCBI   | Zv9   | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_DANIO\_RERIO            | NCBI   | Zv9   | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_DANIO\_RERIO\_NCBI\_ZV9 | NCBI   | Zv9   | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_DANIO\_RERIO                | NCBI   | Zv9   | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_DANIO\_RERIO\_NCBI\_ZV9     | NCBI   | Zv9   | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_DANIO\_RERIO                | NCBI   | Zv9   | Chromosome Fasta Files     |
| CHR\_DANIO\_RERIO\_NCBI\_ZV9     | NCBI   | Zv9   | Chromosome Fasta Files     |
| DANIO\_RERIO                     | NCBI   | Zv9   | Main Directory             |
| DANIO\_RERIO\_NCBI\_ZV9          | NCBI   | Zv9   | Main Directory             |
| FAIDX\_DANIO\_RERIO              | NCBI   | Zv9   | Fasta Index .fai File      |
| FAIDX\_DANIO\_RERIO\_NCBI\_ZV9   | NCBI   | Zv9   | Fasta Index .fai File      |
| GENOME\_DANIO\_RERIO             | NCBI   | Zv9   | Genome Fasta File          |
| GENOME\_DANIO\_RERIO\_NCBI\_ZV9  | NCBI   | Zv9   | Genome Fasta File          |
| PICARD\_DANIO\_RERIO             | NCBI   | Zv9   | Picard .dict File          |
| PICARD\_DANIO\_RERIO\_NCBI\_ZV9  | NCBI   | Zv9   | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Drosophila\_melanogaster</span>

| Short Name                                          | Source | Build     | Type                       |
|-----------------------------------------------------|--------|-----------|----------------------------|
| BOWTIE\_DROSOPHILA\_MELANOGASTER                    | NCBI   | build5.41 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_DROSOPHILA\_MELANOGASTER\_NCBI\_BUILD5\_41  | NCBI   | build5.41 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_DROSOPHILA\_MELANOGASTER                   | NCBI   | build5.41 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_DROSOPHILA\_MELANOGASTER\_NCBI\_BUILD5\_41 | NCBI   | build5.41 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_DROSOPHILA\_MELANOGASTER                       | NCBI   | build5.41 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_DROSOPHILA\_MELANOGASTER\_NCBI\_BUILD5\_41     | NCBI   | build5.41 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_DROSOPHILA\_MELANOGASTER                       | NCBI   | build5.41 | Chromosome Fasta Files     |
| CHR\_DROSOPHILA\_MELANOGASTER\_NCBI\_BUILD5\_41     | NCBI   | build5.41 | Chromosome Fasta Files     |
| DROSOPHILA\_MELANOGASTER                            | NCBI   | build5.41 | Main Directory             |
| DROSOPHILA\_MELANOGASTER\_NCBI\_BUILD5\_41          | NCBI   | build5.41 | Main Directory             |
| FAIDX\_DROSOPHILA\_MELANOGASTER                     | NCBI   | build5.41 | Fasta Index .fai File      |
| FAIDX\_DROSOPHILA\_MELANOGASTER\_NCBI\_BUILD5\_41   | NCBI   | build5.41 | Fasta Index .fai File      |
| GENOME\_DROSOPHILA\_MELANOGASTER                    | NCBI   | build5.41 | Genome Fasta File          |
| GENOME\_DROSOPHILA\_MELANOGASTER\_NCBI\_BUILD5\_41  | NCBI   | build5.41 | Genome Fasta File          |
| PICARD\_DROSOPHILA\_MELANOGASTER                    | NCBI   | build5.41 | Picard .dict File          |
| PICARD\_DROSOPHILA\_MELANOGASTER\_NCBI\_BUILD5\_41  | NCBI   | build5.41 | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Enterobacteriophage\_lambda</span>

| Short Name                                               | Source | Build      | Type                       |
|----------------------------------------------------------|--------|------------|----------------------------|
| BOWTIE\_ELAMBDA                                          | NCBI   | 1993-04-28 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_ENTEROBACTERIOPHAGE\_LAMBDA\_NCBI\_1993\_04\_28  | NCBI   | 1993-04-28 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_ELAMBDA                                         | NCBI   | 1993-04-28 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_ENTEROBACTERIOPHAGE\_LAMBDA\_NCBI\_1993\_04\_28 | NCBI   | 1993-04-28 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_ELAMBDA                                             | NCBI   | 1993-04-28 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_ENTEROBACTERIOPHAGE\_LAMBDA\_NCBI\_1993\_04\_28     | NCBI   | 1993-04-28 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_ELAMBDA                                             | NCBI   | 1993-04-28 | Chromosome Fasta Files     |
| CHR\_ENTEROBACTERIOPHAGE\_LAMBDA\_NCBI\_1993\_04\_28     | NCBI   | 1993-04-28 | Chromosome Fasta Files     |
| ELAMBDA                                                  | NCBI   | 1993-04-28 | Main Directory             |
| ENTEROBACTERIOPHAGE\_LAMBDA\_NCBI\_1993\_04\_28          | NCBI   | 1993-04-28 | Main Directory             |
| FAIDX\_ELAMBDA                                           | NCBI   | 1993-04-28 | Fasta Index .fai File      |
| FAIDX\_ENTEROBACTERIOPHAGE\_LAMBDA\_NCBI\_1993\_04\_28   | NCBI   | 1993-04-28 | Fasta Index .fai File      |
| GENOME\_ELAMBDA                                          | NCBI   | 1993-04-28 | Genome Fasta File          |
| GENOME\_ENTEROBACTERIOPHAGE\_LAMBDA\_NCBI\_1993\_04\_28  | NCBI   | 1993-04-28 | Genome Fasta File          |
| PICARD\_ELAMBDA                                          | NCBI   | 1993-04-28 | Picard .dict File          |
| PICARD\_ENTEROBACTERIOPHAGE\_LAMBDA\_NCBI\_1993\_04\_28  | NCBI   | 1993-04-28 | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Equus\_caballus</span>

| Short Name                                 | Source | Build     | Type                       |
|--------------------------------------------|--------|-----------|----------------------------|
| BOWTIE\_EQUUS\_CABALLUS\_NCBI\_EQUCAB2\_0  | NCBI   | EquCab2.0 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_HORSE                              | NCBI   | EquCab2.0 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_EQUUS\_CABALLUS\_NCBI\_EQUCAB2\_0 | NCBI   | EquCab2.0 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_HORSE                             | NCBI   | EquCab2.0 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_EQUUS\_CABALLUS\_NCBI\_EQUCAB2\_0     | NCBI   | EquCab2.0 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_HORSE                                 | NCBI   | EquCab2.0 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_EQUUS\_CABALLUS\_NCBI\_EQUCAB2\_0     | NCBI   | EquCab2.0 | Chromosome Fasta Files     |
| CHR\_HORSE                                 | NCBI   | EquCab2.0 | Chromosome Fasta Files     |
| EQUUS\_CABALLUS\_NCBI\_EQUCAB2\_0          | NCBI   | EquCab2.0 | Main Directory             |
| FAIDX\_EQUUS\_CABALLUS\_NCBI\_EQUCAB2\_0   | NCBI   | EquCab2.0 | Fasta Index .fai File      |
| FAIDX\_HORSE                               | NCBI   | EquCab2.0 | Fasta Index .fai File      |
| GENOME\_EQUUS\_CABALLUS\_NCBI\_EQUCAB2\_0  | NCBI   | EquCab2.0 | Genome Fasta File          |
| GENOME\_HORSE                              | NCBI   | EquCab2.0 | Genome Fasta File          |
| HORSE                                      | NCBI   | EquCab2.0 | Main Directory             |
| PICARD\_EQUUS\_CABALLUS\_NCBI\_EQUCAB2\_0  | NCBI   | EquCab2.0 | Picard .dict File          |
| PICARD\_HORSE                              | NCBI   | EquCab2.0 | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Escherichia\_coli\_K\_12\_DH10B</span>

| Short Name                                                   | Source | Build      | Type                       |
|--------------------------------------------------------------|--------|------------|----------------------------|
| BOWTIE\_ESCHERICHIA\_COLI\_K\_12\_DH10B                      | NCBI   | 2008-03-17 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_ESCHERICHIA\_COLI\_K\_12\_DH10B\_NCBI\_2008\_03\_17  | NCBI   | 2008-03-17 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_ESCHERICHIA\_COLI\_K\_12\_DH10B                     | NCBI   | 2008-03-17 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_ESCHERICHIA\_COLI\_K\_12\_DH10B\_NCBI\_2008\_03\_17 | NCBI   | 2008-03-17 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_ESCHERICHIA\_COLI\_K\_12\_DH10B                         | NCBI   | 2008-03-17 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_ESCHERICHIA\_COLI\_K\_12\_DH10B\_NCBI\_2008\_03\_17     | NCBI   | 2008-03-17 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_ESCHERICHIA\_COLI\_K\_12\_DH10B                         | NCBI   | 2008-03-17 | Chromosome Fasta Files     |
| CHR\_ESCHERICHIA\_COLI\_K\_12\_DH10B\_NCBI\_2008\_03\_17     | NCBI   | 2008-03-17 | Chromosome Fasta Files     |
| ESCHERICHIA\_COLI\_K\_12\_DH10B                              | NCBI   | 2008-03-17 | Main Directory             |
| ESCHERICHIA\_COLI\_K\_12\_DH10B\_NCBI\_2008\_03\_17          | NCBI   | 2008-03-17 | Main Directory             |
| FAIDX\_ESCHERICHIA\_COLI\_K\_12\_DH10B                       | NCBI   | 2008-03-17 | Fasta Index .fai File      |
| FAIDX\_ESCHERICHIA\_COLI\_K\_12\_DH10B\_NCBI\_2008\_03\_17   | NCBI   | 2008-03-17 | Fasta Index .fai File      |
| GENOME\_ESCHERICHIA\_COLI\_K\_12\_DH10B                      | NCBI   | 2008-03-17 | Genome Fasta File          |
| GENOME\_ESCHERICHIA\_COLI\_K\_12\_DH10B\_NCBI\_2008\_03\_17  | NCBI   | 2008-03-17 | Genome Fasta File          |
| PICARD\_ESCHERICHIA\_COLI\_K\_12\_DH10B                      | NCBI   | 2008-03-17 | Picard .dict File          |
| PICARD\_ESCHERICHIA\_COLI\_K\_12\_DH10B\_NCBI\_2008\_03\_17  | NCBI   | 2008-03-17 | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Escherichia\_coli\_K\_12\_MG1655</span>

| Short Name                                                    | Source | Build      | Type                       |
|---------------------------------------------------------------|--------|------------|----------------------------|
| BOWTIE\_ESCHERICHIA\_COLI\_K\_12\_MG1655                      | NCBI   | 2001-10-15 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_ESCHERICHIA\_COLI\_K\_12\_MG1655\_NCBI\_2001\_10\_15  | NCBI   | 2001-10-15 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_ESCHERICHIA\_COLI\_K\_12\_MG1655                     | NCBI   | 2001-10-15 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_ESCHERICHIA\_COLI\_K\_12\_MG1655\_NCBI\_2001\_10\_15 | NCBI   | 2001-10-15 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_ESCHERICHIA\_COLI\_K\_12\_MG1655                         | NCBI   | 2001-10-15 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_ESCHERICHIA\_COLI\_K\_12\_MG1655\_NCBI\_2001\_10\_15     | NCBI   | 2001-10-15 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_ESCHERICHIA\_COLI\_K\_12\_MG1655                         | NCBI   | 2001-10-15 | Chromosome Fasta Files     |
| CHR\_ESCHERICHIA\_COLI\_K\_12\_MG1655\_NCBI\_2001\_10\_15     | NCBI   | 2001-10-15 | Chromosome Fasta Files     |
| ESCHERICHIA\_COLI\_K\_12\_MG1655                              | NCBI   | 2001-10-15 | Main Directory             |
| ESCHERICHIA\_COLI\_K\_12\_MG1655\_NCBI\_2001\_10\_15          | NCBI   | 2001-10-15 | Main Directory             |
| FAIDX\_ESCHERICHIA\_COLI\_K\_12\_MG1655                       | NCBI   | 2001-10-15 | Fasta Index .fai File      |
| FAIDX\_ESCHERICHIA\_COLI\_K\_12\_MG1655\_NCBI\_2001\_10\_15   | NCBI   | 2001-10-15 | Fasta Index .fai File      |
| GENOME\_ESCHERICHIA\_COLI\_K\_12\_MG1655                      | NCBI   | 2001-10-15 | Genome Fasta File          |
| GENOME\_ESCHERICHIA\_COLI\_K\_12\_MG1655\_NCBI\_2001\_10\_15  | NCBI   | 2001-10-15 | Genome Fasta File          |
| PICARD\_ESCHERICHIA\_COLI\_K\_12\_MG1655                      | NCBI   | 2001-10-15 | Picard .dict File          |
| PICARD\_ESCHERICHIA\_COLI\_K\_12\_MG1655\_NCBI\_2001\_10\_15  | NCBI   | 2001-10-15 | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Gallus\_gallus</span>

| Short Name                               | Source | Build    | Type                       |
|------------------------------------------|--------|----------|----------------------------|
| BOWTIE\_GALLUS\_GALLUS                   | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_GALLUS\_GALLUS\_NCBI\_BUILD3\_1  | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_GALLUS\_GALLUS                  | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_GALLUS\_GALLUS\_NCBI\_BUILD3\_1 | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_GALLUS\_GALLUS                      | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_GALLUS\_GALLUS\_NCBI\_BUILD3\_1     | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_GALLUS\_GALLUS                      | NCBI   | build3.1 | Chromosome Fasta Files     |
| CHR\_GALLUS\_GALLUS\_NCBI\_BUILD3\_1     | NCBI   | build3.1 | Chromosome Fasta Files     |
| FAIDX\_GALLUS\_GALLUS                    | NCBI   | build3.1 | Fasta Index .fai File      |
| FAIDX\_GALLUS\_GALLUS\_NCBI\_BUILD3\_1   | NCBI   | build3.1 | Fasta Index .fai File      |
| GALLUS\_GALLUS                           | NCBI   | build3.1 | Main Directory             |
| GALLUS\_GALLUS\_NCBI\_BUILD3\_1          | NCBI   | build3.1 | Main Directory             |
| GENOME\_GALLUS\_GALLUS                   | NCBI   | build3.1 | Genome Fasta File          |
| GENOME\_GALLUS\_GALLUS\_NCBI\_BUILD3\_1  | NCBI   | build3.1 | Genome Fasta File          |
| PICARD\_GALLUS\_GALLUS                   | NCBI   | build3.1 | Picard .dict File          |
| PICARD\_GALLUS\_GALLUS\_NCBI\_BUILD3\_1  | NCBI   | build3.1 | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Glycine\_max</span>

| Short Name                           | Source  | Build | Type                       |
|--------------------------------------|---------|-------|----------------------------|
| BOWTIE\_GLYCINE\_MAX\_ENSEMBL\_GM01  | Ensembl | Gm01  | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_SOYBEAN                      | Ensembl | Gm01  | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_GLYCINE\_MAX\_ENSEMBL\_GM01 | Ensembl | Gm01  | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_SOYBEAN                     | Ensembl | Gm01  | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_GLYCINE\_MAX\_ENSEMBL\_GM01     | Ensembl | Gm01  | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_SOYBEAN                         | Ensembl | Gm01  | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_GLYCINE\_MAX\_ENSEMBL\_GM01     | Ensembl | Gm01  | Chromosome Fasta Files     |
| CHR\_SOYBEAN                         | Ensembl | Gm01  | Chromosome Fasta Files     |
| FAIDX\_GLYCINE\_MAX\_ENSEMBL\_GM01   | Ensembl | Gm01  | Fasta Index .fai File      |
| FAIDX\_SOYBEAN                       | Ensembl | Gm01  | Fasta Index .fai File      |
| GENOME\_GLYCINE\_MAX\_ENSEMBL\_GM01  | Ensembl | Gm01  | Genome Fasta File          |
| GENOME\_SOYBEAN                      | Ensembl | Gm01  | Genome Fasta File          |
| GLYCINE\_MAX\_ENSEMBL\_GM01          | Ensembl | Gm01  | Main Directory             |
| PICARD\_GLYCINE\_MAX\_ENSEMBL\_GM01  | Ensembl | Gm01  | Picard .dict File          |
| PICARD\_SOYBEAN                      | Ensembl | Gm01  | Picard .dict File          |
| SOYBEAN                              | Ensembl | Gm01  | Main Directory             |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Homo\_sapiens</span>

| Short Name                               | Source | Build     | Type                       |
|------------------------------------------|--------|-----------|----------------------------|
| BOWTIE\_HOMO\_SAPIENS\_NCBI\_BUILD37\_2  | NCBI   | build37.2 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_HUMAN                            | NCBI   | build37.2 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_HOMO\_SAPIENS\_NCBI\_BUILD37\_2 | NCBI   | build37.2 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_HUMAN                           | NCBI   | build37.2 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_HOMO\_SAPIENS\_NCBI\_BUILD37\_2     | NCBI   | build37.2 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_HUMAN                               | NCBI   | build37.2 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_HOMO\_SAPIENS\_NCBI\_BUILD37\_2     | NCBI   | build37.2 | Chromosome Fasta Files     |
| CHR\_HUMAN                               | NCBI   | build37.2 | Chromosome Fasta Files     |
| FAIDX\_HOMO\_SAPIENS\_NCBI\_BUILD37\_2   | NCBI   | build37.2 | Fasta Index .fai File      |
| FAIDX\_HUMAN                             | NCBI   | build37.2 | Fasta Index .fai File      |
| GENOME\_HOMO\_SAPIENS\_NCBI\_BUILD37\_2  | NCBI   | build37.2 | Genome Fasta File          |
| GENOME\_HUMAN                            | NCBI   | build37.2 | Genome Fasta File          |
| HOMO\_SAPIENS\_NCBI\_BUILD37\_2          | NCBI   | build37.2 | Main Directory             |
| HUMAN                                    | NCBI   | build37.2 | Main Directory             |
| PICARD\_HOMO\_SAPIENS\_NCBI\_BUILD37\_2  | NCBI   | build37.2 | Picard .dict File          |
| PICARD\_HUMAN                            | NCBI   | build37.2 | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Macaca\_mulatta</span>

| Short Name                                 | Source  | Build   | Type                       |
|--------------------------------------------|---------|---------|----------------------------|
| BOWTIE\_MACACA\_MULATTA                    | Ensembl | Mmul\_1 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_MACACA\_MULATTA\_ENSEMBL\_MMUL\_1  | Ensembl | Mmul\_1 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_MACACA\_MULATTA                   | Ensembl | Mmul\_1 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_MACACA\_MULATTA\_ENSEMBL\_MMUL\_1 | Ensembl | Mmul\_1 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_MACACA\_MULATTA                       | Ensembl | Mmul\_1 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_MACACA\_MULATTA\_ENSEMBL\_MMUL\_1     | Ensembl | Mmul\_1 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_MACACA\_MULATTA                       | Ensembl | Mmul\_1 | Chromosome Fasta Files     |
| CHR\_MACACA\_MULATTA\_ENSEMBL\_MMUL\_1     | Ensembl | Mmul\_1 | Chromosome Fasta Files     |
| FAIDX\_MACACA\_MULATTA                     | Ensembl | Mmul\_1 | Fasta Index .fai File      |
| FAIDX\_MACACA\_MULATTA\_ENSEMBL\_MMUL\_1   | Ensembl | Mmul\_1 | Fasta Index .fai File      |
| GENOME\_MACACA\_MULATTA                    | Ensembl | Mmul\_1 | Genome Fasta File          |
| GENOME\_MACACA\_MULATTA\_ENSEMBL\_MMUL\_1  | Ensembl | Mmul\_1 | Genome Fasta File          |
| MACACA\_MULATTA                            | Ensembl | Mmul\_1 | Main Directory             |
| MACACA\_MULATTA\_ENSEMBL\_MMUL\_1          | Ensembl | Mmul\_1 | Main Directory             |
| PICARD\_MACACA\_MULATTA                    | Ensembl | Mmul\_1 | Picard .dict File          |
| PICARD\_MACACA\_MULATTA\_ENSEMBL\_MMUL\_1  | Ensembl | Mmul\_1 | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Mus\_musculus</span>

| Short Name                           | Source | Build  | Type                       |
|--------------------------------------|--------|--------|----------------------------|
| BOWTIE\_MOUSE                        | NCBI   | GRCm38 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_MUS\_MUSCULUS\_NCBI\_GRCM38  | NCBI   | GRCm38 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_MOUSE                       | NCBI   | GRCm38 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_MUS\_MUSCULUS\_NCBI\_GRCM38 | NCBI   | GRCm38 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_MOUSE                           | NCBI   | GRCm38 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_MUS\_MUSCULUS\_NCBI\_GRCM38     | NCBI   | GRCm38 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_MOUSE                           | NCBI   | GRCm38 | Chromosome Fasta Files     |
| CHR\_MUS\_MUSCULUS\_NCBI\_GRCM38     | NCBI   | GRCm38 | Chromosome Fasta Files     |
| FAIDX\_MOUSE                         | NCBI   | GRCm38 | Fasta Index .fai File      |
| FAIDX\_MUS\_MUSCULUS\_NCBI\_GRCM38   | NCBI   | GRCm38 | Fasta Index .fai File      |
| GENOME\_MOUSE                        | NCBI   | GRCm38 | Genome Fasta File          |
| GENOME\_MUS\_MUSCULUS\_NCBI\_GRCM38  | NCBI   | GRCm38 | Genome Fasta File          |
| MOUSE                                | NCBI   | GRCm38 | Main Directory             |
| MUS\_MUSCULUS\_NCBI\_GRCM38          | NCBI   | GRCm38 | Main Directory             |
| PICARD\_MOUSE                        | NCBI   | GRCm38 | Picard .dict File          |
| PICARD\_MUS\_MUSCULUS\_NCBI\_GRCM38  | NCBI   | GRCm38 | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Mycobacterium\_tuberculosis\_H37RV</span>

| Short Name                                                      | Source | Build      | Type                       |
|-----------------------------------------------------------------|--------|------------|----------------------------|
| BOWTIE\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV                      | NCBI   | 2001-09-07 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV\_NCBI\_2001\_09\_07  | NCBI   | 2001-09-07 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV                     | NCBI   | 2001-09-07 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV\_NCBI\_2001\_09\_07 | NCBI   | 2001-09-07 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV                         | NCBI   | 2001-09-07 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV\_NCBI\_2001\_09\_07     | NCBI   | 2001-09-07 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV                         | NCBI   | 2001-09-07 | Chromosome Fasta Files     |
| CHR\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV\_NCBI\_2001\_09\_07     | NCBI   | 2001-09-07 | Chromosome Fasta Files     |
| FAIDX\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV                       | NCBI   | 2001-09-07 | Fasta Index .fai File      |
| FAIDX\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV\_NCBI\_2001\_09\_07   | NCBI   | 2001-09-07 | Fasta Index .fai File      |
| GENOME\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV                      | NCBI   | 2001-09-07 | Genome Fasta File          |
| GENOME\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV\_NCBI\_2001\_09\_07  | NCBI   | 2001-09-07 | Genome Fasta File          |
| MYCOBACTERIUM\_TUBERCULOSIS\_H37RV                              | NCBI   | 2001-09-07 | Main Directory             |
| MYCOBACTERIUM\_TUBERCULOSIS\_H37RV\_NCBI\_2001\_09\_07          | NCBI   | 2001-09-07 | Main Directory             |
| PICARD\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV                      | NCBI   | 2001-09-07 | Picard .dict File          |
| PICARD\_MYCOBACTERIUM\_TUBERCULOSIS\_H37RV\_NCBI\_2001\_09\_07  | NCBI   | 2001-09-07 | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Oryza\_sativa\_japonica</span>

| Short Name                                             | Source  | Build     | Type                       |
|--------------------------------------------------------|---------|-----------|----------------------------|
| BOWTIE\_ORYZA\_SATIVA\_JAPONICA\_ENSEMBL\_IRGSP\_1\_0  | Ensembl | IRGSP-1.0 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_RICE                                           | Ensembl | IRGSP-1.0 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_ORYZA\_SATIVA\_JAPONICA\_ENSEMBL\_IRGSP\_1\_0 | Ensembl | IRGSP-1.0 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_RICE                                          | Ensembl | IRGSP-1.0 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_ORYZA\_SATIVA\_JAPONICA\_ENSEMBL\_IRGSP\_1\_0     | Ensembl | IRGSP-1.0 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_RICE                                              | Ensembl | IRGSP-1.0 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_ORYZA\_SATIVA\_JAPONICA\_ENSEMBL\_IRGSP\_1\_0     | Ensembl | IRGSP-1.0 | Chromosome Fasta Files     |
| CHR\_RICE                                              | Ensembl | IRGSP-1.0 | Chromosome Fasta Files     |
| FAIDX\_ORYZA\_SATIVA\_JAPONICA\_ENSEMBL\_IRGSP\_1\_0   | Ensembl | IRGSP-1.0 | Fasta Index .fai File      |
| FAIDX\_RICE                                            | Ensembl | IRGSP-1.0 | Fasta Index .fai File      |
| GENOME\_ORYZA\_SATIVA\_JAPONICA\_ENSEMBL\_IRGSP\_1\_0  | Ensembl | IRGSP-1.0 | Genome Fasta File          |
| GENOME\_RICE                                           | Ensembl | IRGSP-1.0 | Genome Fasta File          |
| ORYZA\_SATIVA\_JAPONICA\_ENSEMBL\_IRGSP\_1\_0          | Ensembl | IRGSP-1.0 | Main Directory             |
| PICARD\_ORYZA\_SATIVA\_JAPONICA\_ENSEMBL\_IRGSP\_1\_0  | Ensembl | IRGSP-1.0 | Picard .dict File          |
| PICARD\_RICE                                           | Ensembl | IRGSP-1.0 | Picard .dict File          |
| RICE                                                   | Ensembl | IRGSP-1.0 | Main Directory             |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Pan\_troglodytes</span>

| Short Name                                 | Source | Build    | Type                       |
|--------------------------------------------|--------|----------|----------------------------|
| BOWTIE\_PAN\_TROGLODYTES                   | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_PAN\_TROGLODYTES\_NCBI\_BUILD3\_1  | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_PAN\_TROGLODYTES                  | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_PAN\_TROGLODYTES\_NCBI\_BUILD3\_1 | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_PAN\_TROGLODYTES                      | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_PAN\_TROGLODYTES\_NCBI\_BUILD3\_1     | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_PAN\_TROGLODYTES                      | NCBI   | build3.1 | Chromosome Fasta Files     |
| CHR\_PAN\_TROGLODYTES\_NCBI\_BUILD3\_1     | NCBI   | build3.1 | Chromosome Fasta Files     |
| FAIDX\_PAN\_TROGLODYTES                    | NCBI   | build3.1 | Fasta Index .fai File      |
| FAIDX\_PAN\_TROGLODYTES\_NCBI\_BUILD3\_1   | NCBI   | build3.1 | Fasta Index .fai File      |
| GENOME\_PAN\_TROGLODYTES                   | NCBI   | build3.1 | Genome Fasta File          |
| GENOME\_PAN\_TROGLODYTES\_NCBI\_BUILD3\_1  | NCBI   | build3.1 | Genome Fasta File          |
| PAN\_TROGLODYTES                           | NCBI   | build3.1 | Main Directory             |
| PAN\_TROGLODYTES\_NCBI\_BUILD3\_1          | NCBI   | build3.1 | Main Directory             |
| PICARD\_PAN\_TROGLODYTES                   | NCBI   | build3.1 | Picard .dict File          |
| PICARD\_PAN\_TROGLODYTES\_NCBI\_BUILD3\_1  | NCBI   | build3.1 | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">PhiX</span>

| Short Name                   | Source   | Build | Type                       |
|------------------------------|----------|-------|----------------------------|
| BOWTIE\_PHIX                 | Illumina | RTA   | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_PHIX\_ILLUMINA\_RTA  | Illumina | RTA   | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_PHIX                | Illumina | RTA   | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_PHIX\_ILLUMINA\_RTA | Illumina | RTA   | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_PHIX                    | Illumina | RTA   | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_PHIX\_ILLUMINA\_RTA     | Illumina | RTA   | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_PHIX                    | Illumina | RTA   | Chromosome Fasta Files     |
| CHR\_PHIX\_ILLUMINA\_RTA     | Illumina | RTA   | Chromosome Fasta Files     |
| FAIDX\_PHIX                  | Illumina | RTA   | Fasta Index .fai File      |
| FAIDX\_PHIX\_ILLUMINA\_RTA   | Illumina | RTA   | Fasta Index .fai File      |
| GENOME\_PHIX                 | Illumina | RTA   | Genome Fasta File          |
| GENOME\_PHIX\_ILLUMINA\_RTA  | Illumina | RTA   | Genome Fasta File          |
| PHIX                         | Illumina | RTA   | Main Directory             |
| PHIX\_ILLUMINA\_RTA          | Illumina | RTA   | Main Directory             |
| PICARD\_PHIX                 | Illumina | RTA   | Picard .dict File          |
| PICARD\_PHIX\_ILLUMINA\_RTA  | Illumina | RTA   | Picard .dict File          |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Pseudomonas\_aeruginosa\_PAO1</span>

| Short Name                                                 | Source | Build      | Type                       |
|------------------------------------------------------------|--------|------------|----------------------------|
| BOWTIE\_PSEUDOMONAS\_AERUGINOSA\_PAO1                      | NCBI   | 2000-09-13 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_PSEUDOMONAS\_AERUGINOSA\_PAO1\_NCBI\_2000\_09\_13  | NCBI   | 2000-09-13 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_PSEUDOMONAS\_AERUGINOSA\_PAO1                     | NCBI   | 2000-09-13 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_PSEUDOMONAS\_AERUGINOSA\_PAO1\_NCBI\_2000\_09\_13 | NCBI   | 2000-09-13 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_PSEUDOMONAS\_AERUGINOSA\_PAO1                         | NCBI   | 2000-09-13 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_PSEUDOMONAS\_AERUGINOSA\_PAO1\_NCBI\_2000\_09\_13     | NCBI   | 2000-09-13 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_PSEUDOMONAS\_AERUGINOSA\_PAO1                         | NCBI   | 2000-09-13 | Chromosome Fasta Files     |
| CHR\_PSEUDOMONAS\_AERUGINOSA\_PAO1\_NCBI\_2000\_09\_13     | NCBI   | 2000-09-13 | Chromosome Fasta Files     |
| FAIDX\_PSEUDOMONAS\_AERUGINOSA\_PAO1                       | NCBI   | 2000-09-13 | Fasta Index .fai File      |
| FAIDX\_PSEUDOMONAS\_AERUGINOSA\_PAO1\_NCBI\_2000\_09\_13   | NCBI   | 2000-09-13 | Fasta Index .fai File      |
| GENOME\_PSEUDOMONAS\_AERUGINOSA\_PAO1                      | NCBI   | 2000-09-13 | Genome Fasta File          |
| GENOME\_PSEUDOMONAS\_AERUGINOSA\_PAO1\_NCBI\_2000\_09\_13  | NCBI   | 2000-09-13 | Genome Fasta File          |
| PICARD\_PSEUDOMONAS\_AERUGINOSA\_PAO1                      | NCBI   | 2000-09-13 | Picard .dict File          |
| PICARD\_PSEUDOMONAS\_AERUGINOSA\_PAO1\_NCBI\_2000\_09\_13  | NCBI   | 2000-09-13 | Picard .dict File          |
| PSEUDOMONAS\_AERUGINOSA\_PAO1                              | NCBI   | 2000-09-13 | Main Directory             |
| PSEUDOMONAS\_AERUGINOSA\_PAO1\_NCBI\_2000\_09\_13          | NCBI   | 2000-09-13 | Main Directory             |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Rattus\_norvegicus</span>

| Short Name                                    | Source | Build     | Type                       |
|-----------------------------------------------|--------|-----------|----------------------------|
| BOWTIE\_RAT                                   | NCBI   | Rnor\_5.0 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_5\_0  | NCBI   | Rnor\_5.0 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_6\_0  | NCBI   | Rnor\_6.0 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_RAT                                  | NCBI   | Rnor\_5.0 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_5\_0 | NCBI   | Rnor\_5.0 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_6\_0 | NCBI   | Rnor\_6.0 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_RAT                                      | NCBI   | Rnor\_5.0 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_5\_0     | NCBI   | Rnor\_5.0 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_6\_0     | NCBI   | Rnor\_6.0 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_RAT                                      | NCBI   | Rnor\_5.0 | Chromosome Fasta Files     |
| CHR\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_5\_0     | NCBI   | Rnor\_5.0 | Chromosome Fasta Files     |
| CHR\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_6\_0     | NCBI   | Rnor\_6.0 | Chromosome Fasta Files     |
| FAIDX\_RAT                                    | NCBI   | Rnor\_5.0 | Fasta Index .fai File      |
| FAIDX\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_5\_0   | NCBI   | Rnor\_5.0 | Fasta Index .fai File      |
| FAIDX\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_6\_0   | NCBI   | Rnor\_6.0 | Fasta Index .fai File      |
| GENOME\_RAT                                   | NCBI   | Rnor\_5.0 | Genome Fasta File          |
| GENOME\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_5\_0  | NCBI   | Rnor\_5.0 | Genome Fasta File          |
| GENOME\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_6\_0  | NCBI   | Rnor\_6.0 | Genome Fasta File          |
| PICARD\_RAT                                   | NCBI   | Rnor\_5.0 | Picard .dict File          |
| PICARD\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_5\_0  | NCBI   | Rnor\_5.0 | Picard .dict File          |
| PICARD\_RATTUS\_NORVEGICUS\_NCBI\_RNOR\_6\_0  | NCBI   | Rnor\_6.0 | Picard .dict File          |
| RAT                                           | NCBI   | Rnor\_5.0 | Main Directory             |
| RATTUS\_NORVEGICUS\_NCBI\_RNOR\_5\_0          | NCBI   | Rnor\_5.0 | Main Directory             |
| RATTUS\_NORVEGICUS\_NCBI\_RNOR\_6\_0          | NCBI   | Rnor\_6.0 | Main Directory             |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Saccharomyces\_cerevisiae</span>

| Short Name                                          | Source | Build    | Type                       |
|-----------------------------------------------------|--------|----------|----------------------------|
| BOWTIE\_SACCHAROMYCES\_CEREVISIAE\_NCBI\_BUILD3\_1  | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_YEAST                                       | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_SACCHAROMYCES\_CEREVISIAE\_NCBI\_BUILD3\_1 | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_YEAST                                      | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_SACCHAROMYCES\_CEREVISIAE\_NCBI\_BUILD3\_1     | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_YEAST                                          | NCBI   | build3.1 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_SACCHAROMYCES\_CEREVISIAE\_NCBI\_BUILD3\_1     | NCBI   | build3.1 | Chromosome Fasta Files     |
| CHR\_YEAST                                          | NCBI   | build3.1 | Chromosome Fasta Files     |
| FAIDX\_SACCHAROMYCES\_CEREVISIAE\_NCBI\_BUILD3\_1   | NCBI   | build3.1 | Fasta Index .fai File      |
| FAIDX\_YEAST                                        | NCBI   | build3.1 | Fasta Index .fai File      |
| GENOME\_SACCHAROMYCES\_CEREVISIAE\_NCBI\_BUILD3\_1  | NCBI   | build3.1 | Genome Fasta File          |
| GENOME\_YEAST                                       | NCBI   | build3.1 | Genome Fasta File          |
| PICARD\_SACCHAROMYCES\_CEREVISIAE\_NCBI\_BUILD3\_1  | NCBI   | build3.1 | Picard .dict File          |
| PICARD\_YEAST                                       | NCBI   | build3.1 | Picard .dict File          |
| SACCHAROMYCES\_CEREVISIAE\_NCBI\_BUILD3\_1          | NCBI   | build3.1 | Main Directory             |
| YEAST                                               | NCBI   | build3.1 | Main Directory             |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Sorghum\_bicolor</span>

| Short Name                               | Source  | Build | Type                       |
|------------------------------------------|---------|-------|----------------------------|
| BOWTIE\_SORGHUM                          | Ensembl | Sbi1  | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_SORGHUM\_BICOLOR\_ENSEMBL\_SBI1  | Ensembl | Sbi1  | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_SORGHUM                         | Ensembl | Sbi1  | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_SORGHUM\_BICOLOR\_ENSEMBL\_SBI1 | Ensembl | Sbi1  | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_SORGHUM                             | Ensembl | Sbi1  | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_SORGHUM\_BICOLOR\_ENSEMBL\_SBI1     | Ensembl | Sbi1  | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_SORGHUM                             | Ensembl | Sbi1  | Chromosome Fasta Files     |
| CHR\_SORGHUM\_BICOLOR\_ENSEMBL\_SBI1     | Ensembl | Sbi1  | Chromosome Fasta Files     |
| FAIDX\_SORGHUM                           | Ensembl | Sbi1  | Fasta Index .fai File      |
| FAIDX\_SORGHUM\_BICOLOR\_ENSEMBL\_SBI1   | Ensembl | Sbi1  | Fasta Index .fai File      |
| GENOME\_SORGHUM                          | Ensembl | Sbi1  | Genome Fasta File          |
| GENOME\_SORGHUM\_BICOLOR\_ENSEMBL\_SBI1  | Ensembl | Sbi1  | Genome Fasta File          |
| PICARD\_SORGHUM                          | Ensembl | Sbi1  | Picard .dict File          |
| PICARD\_SORGHUM\_BICOLOR\_ENSEMBL\_SBI1  | Ensembl | Sbi1  | Picard .dict File          |
| SORGHUM                                  | Ensembl | Sbi1  | Main Directory             |
| SORGHUM\_BICOLOR\_ENSEMBL\_SBI1          | Ensembl | Sbi1  | Main Directory             |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Staphylococcus\_aureus\_NCTC\_8325</span>

| Short Name                                                      | Source | Build      | Type                       |
|-----------------------------------------------------------------|--------|------------|----------------------------|
| BOWTIE\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325                      | NCBI   | 2006-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325\_NCBI\_2006\_02\_13  | NCBI   | 2006-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325                     | NCBI   | 2006-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325\_NCBI\_2006\_02\_13 | NCBI   | 2006-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325                         | NCBI   | 2006-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325\_NCBI\_2006\_02\_13     | NCBI   | 2006-02-13 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325                         | NCBI   | 2006-02-13 | Chromosome Fasta Files     |
| CHR\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325\_NCBI\_2006\_02\_13     | NCBI   | 2006-02-13 | Chromosome Fasta Files     |
| FAIDX\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325                       | NCBI   | 2006-02-13 | Fasta Index .fai File      |
| FAIDX\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325\_NCBI\_2006\_02\_13   | NCBI   | 2006-02-13 | Fasta Index .fai File      |
| GENOME\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325                      | NCBI   | 2006-02-13 | Genome Fasta File          |
| GENOME\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325\_NCBI\_2006\_02\_13  | NCBI   | 2006-02-13 | Genome Fasta File          |
| PICARD\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325                      | NCBI   | 2006-02-13 | Picard .dict File          |
| PICARD\_STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325\_NCBI\_2006\_02\_13  | NCBI   | 2006-02-13 | Picard .dict File          |
| STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325                              | NCBI   | 2006-02-13 | Main Directory             |
| STAPHYLOCOCCUS\_AUREUS\_NCTC\_8325\_NCBI\_2006\_02\_13          | NCBI   | 2006-02-13 | Main Directory             |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Sus\_scrofa</span>

| Short Name                               | Source | Build       | Type                       |
|------------------------------------------|--------|-------------|----------------------------|
| BOWTIE\_PIG                              | NCBI   | Sscrofa10.2 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_SUS\_SCROFA\_NCBI\_SSCROFA10\_2  | NCBI   | Sscrofa10.2 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_PIG                             | NCBI   | Sscrofa10.2 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_SUS\_SCROFA\_NCBI\_SSCROFA10\_2 | NCBI   | Sscrofa10.2 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_PIG                                 | NCBI   | Sscrofa10.2 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_SUS\_SCROFA\_NCBI\_SSCROFA10\_2     | NCBI   | Sscrofa10.2 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_PIG                                 | NCBI   | Sscrofa10.2 | Chromosome Fasta Files     |
| CHR\_SUS\_SCROFA\_NCBI\_SSCROFA10\_2     | NCBI   | Sscrofa10.2 | Chromosome Fasta Files     |
| FAIDX\_PIG                               | NCBI   | Sscrofa10.2 | Fasta Index .fai File      |
| FAIDX\_SUS\_SCROFA\_NCBI\_SSCROFA10\_2   | NCBI   | Sscrofa10.2 | Fasta Index .fai File      |
| GENOME\_PIG                              | NCBI   | Sscrofa10.2 | Genome Fasta File          |
| GENOME\_SUS\_SCROFA\_NCBI\_SSCROFA10\_2  | NCBI   | Sscrofa10.2 | Genome Fasta File          |
| PICARD\_PIG                              | NCBI   | Sscrofa10.2 | Picard .dict File          |
| PICARD\_SUS\_SCROFA\_NCBI\_SSCROFA10\_2  | NCBI   | Sscrofa10.2 | Picard .dict File          |
| PIG                                      | NCBI   | Sscrofa10.2 | Main Directory             |
| SUS\_SCROFA\_NCBI\_SSCROFA10\_2          | NCBI   | Sscrofa10.2 | Main Directory             |

<span
class="expand-control-icon"><img src="assets/images/icons/grey_arrow_down.png" class="expand-control-image" /></span><span
class="expand-control-text">Zea\_mays</span>

| Short Name                         | Source  | Build | Type                       |
|------------------------------------|---------|-------|----------------------------|
| BOWTIE\_MAIZE                      | Ensembl | AGPv3 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE\_ZEA\_MAYS\_ENSEMBL\_AGPV3  | Ensembl | AGPv3 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_MAIZE                     | Ensembl | AGPv3 | Bwa\|Bowtie\|Bowtie2 Index |
| BOWTIE2\_ZEA\_MAYS\_ENSEMBL\_AGPV3 | Ensembl | AGPv3 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_MAIZE                         | Ensembl | AGPv3 | Bwa\|Bowtie\|Bowtie2 Index |
| BWA\_ZEA\_MAYS\_ENSEMBL\_AGPV3     | Ensembl | AGPv3 | Bwa\|Bowtie\|Bowtie2 Index |
| CHR\_MAIZE                         | Ensembl | AGPv3 | Chromosome Fasta Files     |
| CHR\_ZEA\_MAYS\_ENSEMBL\_AGPV3     | Ensembl | AGPv3 | Chromosome Fasta Files     |
| FAIDX\_MAIZE                       | Ensembl | AGPv3 | Fasta Index .fai File      |
| FAIDX\_ZEA\_MAYS\_ENSEMBL\_AGPV3   | Ensembl | AGPv3 | Fasta Index .fai File      |
| GENOME\_MAIZE                      | Ensembl | AGPv3 | Genome Fasta File          |
| GENOME\_ZEA\_MAYS\_ENSEMBL\_AGPV3  | Ensembl | AGPv3 | Genome Fasta File          |
| MAIZE                              | Ensembl | AGPv3 | Main Directory             |
| PICARD\_MAIZE                      | Ensembl | AGPv3 | Picard .dict File          |
| PICARD\_ZEA\_MAYS\_ENSEMBL\_AGPV3  | Ensembl | AGPv3 | Picard .dict File          |
| ZEA\_MAYS\_ENSEMBL\_AGPV3          | Ensembl | AGPv3 | Main Directory             |

Attachments:
------------

<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane.xml](attachments/15171894/15171895.xml)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Arabidopsis\_thaliana.xsl](attachments/15171894/15171896.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Bacillus\_cereus\_ATCC\_10987.xsl](attachments/15171894/15171897.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Bacillus\_subtilis\_168.xsl](attachments/15171894/15171898.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Bos\_taurus.xsl](attachments/15171894/15171899.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Caenorhabditis\_elegans.xsl](attachments/15171894/15171900.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Canis\_familiaris.xsl](attachments/15171894/15171901.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Danio\_rerio.xsl](attachments/15171894/15171902.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Drosophila\_melanogaster.xsl](attachments/15171894/15171903.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Enterobacteriophage\_lambda.xsl](attachments/15171894/15171904.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Equus\_caballus.xsl](attachments/15171894/15171905.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Escherichia\_coli\_K\_12\_DH10B.xsl](attachments/15171894/15171906.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Escherichia\_coli\_K\_12\_MG1655.xsl](attachments/15171894/15171907.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Gallus\_gallus.xsl](attachments/15171894/15171908.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Glycine\_max.xsl](attachments/15171894/15171909.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Homo\_sapiens.xsl](attachments/15171894/15171910.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Macaca\_mulatta.xsl](attachments/15171894/15171911.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Mus\_musculus.xsl](attachments/15171894/15171912.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Mycobacterium\_tuberculosis\_H37RV.xsl](attachments/15171894/15171913.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Oryza\_sativa\_japonica.xsl](attachments/15171894/15171914.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Pan\_troglodytes.xsl](attachments/15171894/15171915.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_PhiX.xsl](attachments/15171894/15171916.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Pseudomonas\_aeruginosa\_PAO1.xsl](attachments/15171894/15171917.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Rattus\_norvegicus.xsl](attachments/15171894/15171918.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Saccharomyces\_cerevisiae.xsl](attachments/15171894/15171919.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Sorghum\_bicolor.xsl](attachments/15171894/15171920.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Staphylococcus\_aureus\_NCTC\_8325.xsl](attachments/15171894/15171921.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Sus\_scrofa.xsl](attachments/15171894/15171922.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane\_Zea\_mays.xsl](attachments/15171894/15171923.xsl)
(application/octet-stream)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane.xml](attachments/15171894/35324389.xml) (text/xml)  
<img src="assets/images/icons/bullet_blue.gif" width="8" height="8" />
[biodata\_crane.xml](attachments/15171894/35324388.xml) (text/xml)