diff --git a/JSchnable.tex b/JSchnable.tex index ae11fc516d9170e39f8a22ad295adda98505f0e1..95231f5436ff332435b58f9f86631864d6574f30 100644 --- a/JSchnable.tex +++ b/JSchnable.tex @@ -169,16 +169,14 @@ NSF PGRP Fellowship Supported Visiting Scholar \hfill 2013-2014 \subsection*{Federal (Current)} \begin{itemize} -\item USDA-NIFA ``Improving Causal Gene Detection across Crop and Livestock Species.'' (co-PI) 2023. \$1.3M +\item USDA-NIFA ``Improving Causal Gene Detection across Crop and Livestock Species.'' (co-PI) 2023-2026. \$1.3M \item DOE ``Phenotypic and Molecular Characterization of Nitrogen Responsive Genes in Sorghum.'' (co-PI) 2022-2025. \$2.7M -\item DOE ``\href{https://news.unl.edu/newsrooms/today/article/nebraska-team-merges-machine-learning-plant-genetics-to-maximize-sorghum/}{TGCM: (T)rait, (G)ene, and (C)rop Growth (M)odel directed targeted gene characterization in sorghum}.'' (PI) 2019-2023. \$2.7M -\item NSF ``\href{https://www.nsf.gov/awardsearch/showAward?AWD_ID=1844707}{BTT EAGER: A wearable plant sensor for real-time monitoring of sap flow and stem diameter to accelerate breeding for water use efficiency.}'' (PI) 2019-2023. \$300k -\item USDA-NIFA ``\href{https://portal.nifa.usda.gov/web/crisprojectpages/1022298-high-intensity-phenotyping-sites.html}{High Intensity Phenotyping Sites: Transitioning To A Nationwide Plant Phenotyping Network.}'' (co-PI) 2020-2023. \$3M -\item USDA-NIFA ``\href{https://portal.nifa.usda.gov/web/crisprojectpages/1022368-high-intensity-phenotyping-sitesa-multi-scale-multi-modal-sensing-and-sense-making-cyber-ecosystem-for-genomes-to-fields.html}{High Intensity Phenotyping Sites: A multi-scale, multi-modal sensing and sense-making cyber-ecosystem for Genomes to Fields.}'' (co-PI) 2020-2023. \$2.7M -\item USDA-NIFA ``\href{https://portal.nifa.usda.gov/web/crisprojectpages/1022122-cps-medium-collaborative-research-field-scale-single-plant-resolution-agricultural-management-using-coupled-molecular-and-macro-sensing-and-multi-scale-data-fusion-and-modeling.html}{CPS: Medium: Field-scale, single plant-resolution agricultural management using coupled molecular and macro sensing and multi-scale data fusion and modeling}'' (co-PI) (2020-2023) \$1.05M -\item ARPA-E ``\href{https://arpa-e.energy.gov/?q=news-item/arpa-e-announces-165-million-technologies-supporting-biofuels-supply-chain}{Soil Organic Carbon Networked Measurement System (SOCNET)}'' (co-PI) 2020-2023 \$1.9M -\item NSF ``\href{https://www.nsf.gov/awardsearch/showAward?AWD_ID=1826781}{RII Track-2 FEC: Functional analysis of nitrogen responsive networks in Sorghum.}'' (co-PI) 2018-2023. \$4M -\item FFAR ``\href{http://www.ncsa.illinois.edu/news/story/crops_in_silico_project_awarded_5_million}{Crops in silico: Increasing crop production by connecting models from the microscale to the macroscale.}'' (co-PI) 2019-2023. \$5M +\item DOE ``\href{https://news.unl.edu/newsrooms/today/article/nebraska-team-merges-machine-learning-plant-genetics-to-maximize-sorghum/}{TGCM: (T)rait, (G)ene, and (C)rop Growth (M)odel directed targeted gene characterization in sorghum}.'' (PI) 2019-2024. \$2.7M +\item NSF ``\href{https://www.nsf.gov/awardsearch/showAward?AWD_ID=1844707}{BTT EAGER: A wearable plant sensor for real-time monitoring of sap flow and stem diameter to accelerate breeding for water use efficiency.}'' (PI) 2019-2024. \$300k +\item USDA-NIFA ``\href{https://portal.nifa.usda.gov/web/crisprojectpages/1022298-high-intensity-phenotyping-sites.html}{High Intensity Phenotyping Sites: Transitioning To A Nationwide Plant Phenotyping Network.}'' (co-PI) 2020-2024. \$3M +\item USDA-NIFA ``\href{https://portal.nifa.usda.gov/web/crisprojectpages/1022368-high-intensity-phenotyping-sitesa-multi-scale-multi-modal-sensing-and-sense-making-cyber-ecosystem-for-genomes-to-fields.html}{High Intensity Phenotyping Sites: A multi-scale, multi-modal sensing and sense-making cyber-ecosystem for Genomes to Fields.}'' (co-PI) 2020-2024. \$2.7M +\item NSF ``\href{https://www.nsf.gov/awardsearch/showAward?AWD_ID=1826781}{RII Track-2 FEC: Functional analysis of nitrogen responsive networks in Sorghum.}'' (co-PI) 2018-2024. \$4M +\item FFAR ``\href{http://www.ncsa.illinois.edu/news/story/crops_in_silico_project_awarded_5_million}{Crops in silico: Increasing crop production by connecting models from the microscale to the macroscale.}'' (co-PI) 2019-2024. \$5M \item NSF ``\href{https://aiira.iastate.edu/}{AI Institute for Resilient Agriculture}'' (Investigator) 2021-2026 \$20M %\item DOE-JGI Community Sequencing Program ``Expanding grass genome comparators.'' @@ -187,10 +185,12 @@ NSF PGRP Fellowship Supported Visiting Scholar \hfill 2013-2014 \begin{itemize} \item University of Nebraska ``SPACE2: Space, Policy, Agriculture, Climate, and Extreme Environment.'' (co-PI) 2022-2024 \$150k. \item Nebraska Corn Board ``Genomes to Fields (G2F) - Predicting Final Yield Performance in Variable Environments.'' (PI) 2016-2024. \$350k \textit{(to date)} -\item Wheat Innovation Foundation ``A Low-Cost, High-Throughput Cold Stress Perception Assay for Sorghum Breeding.'' (co-PI) 2019-2023. \$205k \end{itemize} \subsection*{Completed Projects} \begin{itemize} +\item USDA-NIFA ``\href{https://portal.nifa.usda.gov/web/crisprojectpages/1022122-cps-medium-collaborative-research-field-scale-single-plant-resolution-agricultural-management-using-coupled-molecular-and-macro-sensing-and-multi-scale-data-fusion-and-modeling.html}{CPS: Medium: Field-scale, single plant-resolution agricultural management using coupled molecular and macro sensing and multi-scale data fusion and modeling}'' (co-PI) (2020-2023) \$1.05M +\item ARPA-E ``\href{https://arpa-e.energy.gov/?q=news-item/arpa-e-announces-165-million-technologies-supporting-biofuels-supply-chain}{Soil Organic Carbon Networked Measurement System (SOCNET)}'' (co-PI) 2020-2023 \$1.9M +\item Wheat Innovation Foundation ``A Low-Cost, High-Throughput Cold Stress Perception Assay for Sorghum Breeding.'' (co-PI) 2019-2023. \$205k \item ICRISAT ``Identifying Novel Loci Controlling Priority Traits in Pearl Millet and Sorghum using Supervised Classification Algorithms.'' (PI) 2020-2021 \$50k \item ARPA-E ``CORN- Crop Optimization Realized through Neuralnets'' (co-PI) 2020-2022 \$620k \item ARPA-E ``\href{https://unews.utah.edu/protecting-the-field-of-dreams/}{Low cost wireless chemical sensor networks.}'' (co-PI) 2019-2022. \$2.2M @@ -249,9 +249,10 @@ Michael Tross (PhD, Complex Biosystems, UNL Life Sciences Fellow), Nikee Shrestha (PhD, Complex Biosystems, FFAR Career Development Fellow), Waqar Ali (PhD, Complex Biosystems, US-Pakistan Knowledge Corridor Scholar), Jensina Davis (PhD, Complex Biostems, NSF Grad Fellow) -Ramesh Kanna Mathivanan (PhD, Agronomy and Horticulture), Hongyu Jin (co-advised, PhD, Complex Biosystems), Fangyi Li (co-advised, PhD, Complex Biosystems), +Ramesh Kanna Mathivanan (MS, Plant Breeding and Genetics), +Harshita Mangal (MS, Plant Breeding and Genetics) %Amany Gomma (co-advised, PhD, Plant Pathology), %Kahheetah Barnoskie (co-advised MS, Agronomy \& Horticulture), %\item \textbf{Thesis Committees:} @@ -289,9 +290,10 @@ Kyle Linders (co-advised MS, Agronomy \& Horticulture) Bhushit Agarwal (co-advised, MS, Computer Science \& Engineering), Srinidhi Bashyam (co-advised, MS, Computer Science \& Engineering) \item \textbf{Undergraduate Researchers:} -7 NSF supported REU (Research Experience for Undergraduates) students; +8 NSF supported REU (Research Experience for Undergraduates) students; +2 USDA supported REEU (Research and Extension Experience for Undergraduates) students; 3 UCARE (Undergraduate Creative Activities and Research Experience) students; - and 36 undergraduate students supported by regular research funding. + and 51 undergraduate students supported by regular research funding. \item \textbf{High School Researchers:} 2 students supported through the Young Nebraska Scientist program; 1 supported by regular research funding. @@ -299,7 +301,7 @@ Srinidhi Bashyam (co-advised, MS, Computer Science \& Engineering) \section*{Publications} \begin{center} -\textbf{H-Index:} \textbf{\href{https://scholar.google.com/citations?user=cik4JVYAAAAJ}{44}} \\ +\textbf{H-Index:} \textbf{\href{https://scholar.google.com/citations?user=cik4JVYAAAAJ}{45}} \\ Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$undergraduate author, $^\S$corresponding author \end{center} @@ -679,10 +681,11 @@ Plant Gene Regulatory Networks: Methods and Protocols. Editors: Kerstin Kaufmann \subsection*{University} \begin{itemize} \item Consortium for Integrated Translational Biology (CITB)\hfill2014-Present -\item UNL Faculty Greenhouse Committee\hfill2015-Present \item Nebraska Food for Health Center Faculty Advisory Committee\hfill2017-Present -\item Department of Agronomy and Horticulture Awards Committee\hfill2019-Present -\item Department of Agronomy and Horticulture Graduate Admissions Committee\hfill2019-Present +\item Department of Agronomy and Horticulture Promotion and Tenure Committee\hfill2023-Present +\item UNL Faculty Greenhouse Committee\hfill2015-2021 +\item Department of Agronomy and Horticulture Awards Committee\hfill2019-2021 +\item Department of Agronomy and Horticulture Graduate Admissions Committee\hfill2019-2022 \item Biotech Seminar Series Committee\hfill2017-2019 \item Agronomy and Horticulture Faculty Advisory Committee\hfill2017-2019 \item Agronomy and Horticulture Strategic Planning Committee\hfill2018-2019 @@ -706,6 +709,7 @@ Plant Gene Regulatory Networks: Methods and Protocols. Editors: Kerstin Kaufmann \item \textbf{Guest Editor:} The Plant Cell\hfill2019-Present \item Data Management Subcommittee, Maize Genetics Research Collaboration Network \hfill 2018-Present \item MaizeGDB Advisory Committee\hfill 2018-Present +\item Host Committee for International Plant Phenotyping Network 2024 Conference\item \hfill2023-Present \item \textbf{Grant Reviewer:} NSF (panel \& ad hoc), USDA (panel), JGI (panel), Genome British Columbia (ad hoc). \item \textbf{Peer Reviewer (selected, recent)}: Bioinformatics,