diff --git a/JSchnable.tex b/JSchnable.tex index bb25ca15e635b8b08155e5110ef816a9e4d9decb..6e9ca1285dee35fc69b8cfbd1d1579bc89190f23 100644 --- a/JSchnable.tex +++ b/JSchnable.tex @@ -125,8 +125,9 @@ \section*{Employment} \begin{itemize} \item University of Nebraska-Lincoln +\\Professor, Department of Agronomy and Horticulture\hfill 2022-Present \\Charles O. Gardner Professor of Maize Quantitative Genetics \hfill 2019-Present -\\Associate Professor, Department of Agronomy and Horticulture \hfill 2019-Present +\\Associate Professor, Department of Agronomy and Horticulture \hfill 2019-2022 \\Assistant Professor, Department of Agronomy and Horticulture \hfill 2014-2019 \item Chinese Academy of Agricultural Sciences\\ NSF PGRP Fellowship Supported Visiting Scholar \hfill 2014 @@ -137,7 +138,7 @@ NSF PGRP Fellowship Supported Postdoctoral Researcher \hfill 2013 %EDUCATION \section*{Education} \begin{itemize} - \item PhD Plant Biology \hfill 2008-2012\\University of California-Berkeley (Advisor: Michael Freeling) + \item PhD Plant Biology \hfill 2008-2012\\University of California-Berkeley \item BA Biology \hfill 2004-2008\\Cornell University \end{itemize} @@ -235,7 +236,7 @@ Hongyu Jin (PhD, Complex Biosystems), Michael Tross (PhD, Complex Biosystems), Nate Korth (co-advised, PhD, Food Science), Fangyi Li (co-advised, PhD, Complex Biosystems), -Kahheetah Barnoskie (co-advised MS, Agronomy \& Horticulture), +%Kahheetah Barnoskie (co-advised MS, Agronomy \& Horticulture), Kyle Linders (co-advised MS, Agronomy \& Horticulture) \item \textbf{Thesis Committees:} %Abbas Atefi (PhD, Biological Systems Engineering), @@ -250,8 +251,8 @@ Qinnan Yang (PhD, Food Science), J. Preston Hurst (PhD, Agronomy \& Horticulture), %Leandra Parsons (PhD, Agronomy \& Horticulture), Rituaj Khound (PhD, Agronomy \& Horticulture), -Sergio Manuel Gabriel Peralta (PhD, Plant Pathology), -Shimin Chen (PhD, Food Science), +%Sergio Manuel Gabriel Peralta (PhD, Plant Pathology), +%Shimin Chen (PhD, Food Science), Zachery Shomo (PhD, Biochemistry), Jared Haupt (PhD, Biochemistry), %Sairam Behera (PhD, Computer Science), @@ -289,8 +290,6 @@ Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$underg \addtolength{\leftskip}{9mm} \subsection*{Preprints} -\noindent \textbf{Mural RV}, \textbf{Sun G}, \textbf{Grzybowski M}, \textbf{Tross MC}, \textbf{Jin H}, \textbf{Smith C}, Newton L, Andorf CM, Woodhouse MR, Thompson AM, \textbf{Sigmon B}, \textbf{Schnable JC}$^\S$ Association mapping across a multitude of traits collected in diverse environments identifies pleiotropic loci in maize. \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2022.02.25.480753}{10.1101/2022.02.25.480753}\\ - \noindent \textbf{Sun G}, Wase N, Shu S, Jenkins J, Zhou B, Chen C, Sandor L, Plott C, Yoshinga Y, Daum C, Qi P, Barry K, Lipzen A, Berry L, Gottilla T, \textbf{Foltz A}, Yu H, O'Malley R, Zhang C, Devos KM, \textbf{Sigmon B}, Yu B, Obata T, Schmutz J$^\S$, \textbf{Schnable JC}$^\S$ Genome sequence of \textit{Paspalum vaginatum} indicates trehalose may act as a conserved trigger for increased nitrogen use efficiency in grasses. \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2021.08.18.456832}{10.1101/2021.08.18.456832} \\ \noindent Yang Q, Van Haute M, \textbf{Korth N}, Sattler S, Toy J, Rose D, \textbf{Schnable JC}, Benson A$^\S$ Complex trait analysis of human gut microbiome-active traits in \textit{Sorghum bicolor}: a new category of human health traits in food crops. \textsc{Research Square} doi: \href{https://doi.org/10.21203/rs.3.rs-1490527/v1}{10.21203/rs.3.rs-1490527/v1} @@ -299,30 +298,39 @@ Lab members in \textbf{bold}, $^*$authors contributed equally, $^\ddagger$underg \noindent \textbf{Sun G}, Yu H, Wang P, Lopez-Guerrero MG, \textbf{Mural RV}, \textbf{Mizero ON}, \textbf{Grzybowski M}, Song B, van Dijk K, Schachtman DP, Zhang C, \textbf{Schnable JC}$^\S$ A role for heritable transcriptomic variation in maize adaptation to temperate environments. \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2022.01.28.478212}{10.1101/2022.01.28.478212}\\ -\noindent Boatwright JL, Sapkota S, \textbf{Jin H}, \textbf{Schnable JC}, Brenton Z, Boyles R, Kresovich S$^\S$ Sorghum Association Panel whole-genome sequencing establishes pivotal resource for dissecting genomic diversity. \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2021.12.22.473950}{10.1101/2021.12.22.473950}\\ - \noindent Meier MA, Xu G, Lopez-Guerrero MG, Li G, \textbf{Smith C}, \textbf{Sigmon B}, Herr JR, Alfano J, Ge Y, \textbf{Schnable JC}, Yang J$^\S$ Maize root-associated microbes likely under adaptive selection by the host to enhance phenotypic performance. \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2021.11.01.466815}{10.1101/2021.11.01.466815}\\ \noindent \textbf{Miao C}, \textbf{Hoban TP}$^\ddagger$, \textbf{Pages A}$^\ddagger$, Xu Z, Rodene E, Ubbens J, Stavness I, Yang J, \textbf{Schnable JC}$^\S$ Simulated plant images improve maize leaf counting accuracy. \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/706994}{10.1101/706994} \\ \noindent Zhang Z$^\S$, Chen C, Rutkoski J, \textbf{Schnable JC}, Murray S, Wang L, Jin X, Stich B, Crossa J, Hayes B. Harnessing Agronomics Through Genomics and Phenomics in Plant Breeding: A Review. \textsc{preprints.org} doi: \href{https://www.preprints.org/manuscript/202103.0519/v1}{10.20944/preprints202103.0519.v1} -\subsection*{Other Manuscripts in Review} +%\subsection*{Other Manuscripts in Review} -%\noindent Wang M, Shilo S, Levy AA, Zelkowski M, Olson MA, Jiang J, \textbf{Schnable JC}, Sun Q, Pillardy J, Kianian PMA, Kianian SF, Chen C, Pawlowski WP$^\S$ Elucidating features and evolution of recombination sites in plants using machine learning. \textit{(In Review)} \\ -%\noindent \textbf{Korth N}, Parsons L, Van Haute M, Yang Q, Hurst JP, \textbf{Schnable JC}, Holding DR, Benson AK$^\S$ Identification of substrates from quality protein popcorn that promote growth of specific beneficial bacteria in the human gut microbiome. \textit{(In Review)}\\ + +%\noindent Wang M, Shilo S, Levy AA, Zelkowski M, Olson MA, Jiang J, \textbf{Schnable JC}, Sun Q, Pillardy J, Kianian PMA, Kianian SF, Chen C, Pawlowski WP$^\S$ Elucidating features and evolution of recombination sites in plants using machine learning. \textit{(In Review)} \\ %\noindent Yang Q, Van Haute M, \textbf{Korth N}, Sattler S, Toy J, \textbf{Schnable KC}, Benson AK$^\S$ Complex Trait Analysis of Human Gut Microbiome-Active Traits (MATs) in Sorghum bicolor: a new approach for genetic analysis of human health traits in food crops. \textit{(In Review)}\\ -\noindent Kusmec A, Yeh CT, AlKhalifa N ... \textbf{Schnable JC} (26th of 38 authors) ... Willis DM, Wisser RJ, Schnable PS$^\S$ Data-driven identification of environmental variables influencing phenotypic plasticity to facilitate breeding for future climates: a case study involving grain yield of hybrid maize. \textit{(In Review)}\\ +%\noindent Kusmec A, Yeh CT, AlKhalifa N ... \textbf{Schnable JC} (26th of 38 authors) ... Willis DM, Wisser RJ, Schnable PS$^\S$ Data-driven identification of environmental variables influencing phenotypic plasticity to facilitate breeding for future climates: a case study involving grain yield of hybrid maize. \textit{(In Review)}\\ -\noindent Chen J, Wang Z, Tan K, Huang W, Shi J, Li T, Hu J, Wang K, Xin B, Zhao H, Song W, Hufford MB, \textbf{Schnable JC}, Ware DH, Jin W, Lai J$^\S$ A complete telomere-to-telomere assembly of the genome of maize. \textit{(In Review)} +%\noindent Chen J, Wang Z, Tan K, Huang W, Shi J, Li T, Hu J, Wang K, Xin B, Zhao H, Song W, Hufford MB, \textbf{Schnable JC}, Ware DH, Jin W, Lai J$^\S$ A complete telomere-to-telomere assembly of the genome of maize. \textit{(In Review)} \begin{etaremune} \subsection*{Faculty Publications} -\item Rodene E, Xu G, Delen SP, \textbf{Smith C}, Ge Y, \textbf{Schnable JC}, Yang J$^\S$ A UAV-based high-throughput phenotyping approach to assess time-series nitrogen responses and identify traits associated genetic components in maize. \textsc{The Plant Phenome Journal} doi: \href{https://doi.org/10.1002/ppj2.20030}{10.1002/ppj2.20030} \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2021.05.24.445447}{10.1101/2021.05.24.445447} +\item Meier M, Xu G, Lopez-Guerrero, Li G, \textbf{Smith C}, \textbf{Sigmon B}, Herr J, Alfano J, Ge Y, \textbf{Schnable JC}, Yang J$^\S$ (2022) Maize root-associated microbes likely under adaptive selection by the host to enhance phenotypic performance. \textsc{eLife} \textit{(Accepted)} + +\item \textbf{Mural RV}, \textbf{Sun G}, \textbf{Grzybowski M}, \textbf{Tross MC}, \textbf{Jin H}, \textbf{Smith C}, Newton L, Andorf CM, Woodhouse MR, Thompson AM, \textbf{Sigmon B}, \textbf{Schnable JC}$^\S$ (2022) Association mapping across a multitude of traits collected in diverse environments identifies pleiotropic loci in maize. \textsc{Gigascience} doi: \textit{(Accepted)} \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2022.02.25.480753}{10.1101/2022.02.25.480753} + +\item \textbf{Korth N}, Parsons L, Van Haute M, Yang Q, Hurst JP, \textbf{Schnable JC}, Holding DR, Benson AK$^\S$ The unique seed protein composition of quality protein popcorn promotes growth of beneficial bacteria from the human gut microbiome. \textsc{Frontiers in Microbiology} doi: \href{https://www.frontiersin.org/articles/10.3389/fmicb.2022.921456/abstract}{10.3389/fmicb.2022.921456} + +\item \textbf{Mural RV}, \textbf{Schnable JC}$^\S$ (2022) Can the grains offer each other helping hands? Convergent molecular mechanisms associated with domestication and crop improvement in rice and maize. \textsc{Molecular Plant} doi: \href{https://doi.org/10.1016/j.molp.2022.04.003}{10.1016/j.molp.2022.04.003}\\ +\textit{Peer Reviewed Invited Perspective} + +\item Boatwright JL, Sapkota S, \textbf{Jin H}, \textbf{Schnable JC}, Brenton Z, Boyles R, Kresovich S$^\S$ (2022) Sorghum Association Panel whole-genome sequencing establishes pivotal resource for dissecting genomic diversity. \textsc{The Plant Journal} doi: \href{https://doi.org/10.1111/tpj.15853}{10.1111/tpj.15853} \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2021.12.22.473950}{10.1101/2021.12.22.473950} + +\item Rodene E, Xu G, Delen SP, \textbf{Smith C}, Ge Y, \textbf{Schnable JC}, Yang J$^\S$ (2022) A UAV-based high-throughput phenotyping approach to assess time-series nitrogen responses and identify traits associated genetic components in maize. \textsc{The Plant Phenome Journal} doi: \href{https://doi.org/10.1002/ppj2.20030}{10.1002/ppj2.20030} \textsc{bioRxiv} doi: \href{https://doi.org/10.1101/2021.05.24.445447}{10.1101/2021.05.24.445447} \item Yu H, Sandhu J, \textbf{Sun G}, Nguyen H, Clemente T, \textbf{Schnable JC}, Walia H, Xie W, Yu B, Mower JP, Zhang C$^\S$ (2022) Pervasive misannotation of the smallest microexons that are evolutionarily conserved and crucial for gene function in plants. \textsc{Nature Communications} doi: \href{https://doi.org/10.1038/s41467-022-28449-8}{10.1038/s41467-022-28449-8} @@ -720,6 +728,9 @@ Science Advances \begin{itemize} %Michigan Plant Science Symposium %Nexus symposium +\item IPPN-CEPPG Workshop on Environment Simulation and Phenotyping, Gatersleben, Germany\hfill 2022 +\item Michigan State Genome Sciences Symposium (Student Organized), East Lansing, MI, USA\hfill 2022 +\item Nexus Informatics, Kansas City, MO, USA\hfill 2022 \item Molecular Plant Virtual Seminar Series \hfill 2022 \textit{(Remote, COVID)} \item DIGICROP 2022 \hfill 2022 \textit{(Remote, COVID)} \item Machine Learning for Cyber-Agricultural Systems (Keynote) \hfill 2021 \textit{(Remote, COVID)}