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engine.js

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  • trinity.html 3.10 KiB
     <table style="font-size: small">
      <colgroup>
       <col style="width: 10.80757%;"/>
       <col style="width: 7.80757%;"/>
       <col style="width: 9.80757%;"/>
       <col style="width: 6.80757%;"/>
       <col style="width: 6.80757%;"/>
       <col style="width: 6.80757%;"/>
       <col style="width: 6.80757%;"/>
       <col style="width: 6.80757%;"/>
       <col style="width: 6.80757%;"/>
       <col style="width: 6.80757%;"/>
       <col style="width: 6.80757%;"/>
       <col style="width: 6.80757%;"/>
       <col style="width: 6.80757%;"/>
      </colgroup>
     <tbody>
     <tr style="font-size: x-small">
      <th></th>
      <th>total # of sequences</th>
      <th>total # of bases</th>
      <th>total size in MB</th>
      <th>Trinity step 1 used time</th>
      <th>Trinity step 1 used memory</th>
      <th>Trinity step 2 used time</th>
      <th>Trinity step 2 used memory</th>
      <th>Trinity step 3 used time</th>
      <th>Trinity step 3 used memory</th>
      <th>Trinity step 4 used time</th>
      <th>Trinity step 4 used memory</th>
      <th># of used CPUs</th>
     </tr>
    
     <tr>
      <td colspan="1"><strong>small_1.fastq</strong></td>
      <td colspan="1">50,121</td>
      <td colspan="1">2,506,050</td>
      <td colspan="1">8.010</td>
      <td colspan="1" rowspan="2">~ 1 minute</td>
      <td colspan="1" rowspan="2">~ 35 GB</td>
      <td colspan="1" rowspan="2">~ 0.01 hours</td>
      <td colspan="1" rowspan="2">~ 0.6 GB</td>
      <td colspan="1" rowspan="2">~ 0.2 minutes</td>
      <td colspan="1" rowspan="2">~ 0.07 GB</td>
      <td colspan="1" rowspan="2">~ 0.008 hours</td>
      <td colspan="1" rowspan="2">~ 0.8 GB</td>
      <td colspan="1" rowspan="2">8</td>
     </tr>
     <tr>
      <td colspan="1"><strong>small_2.fastq</strong></td>
      <td colspan="1">50,121</td>
      <td colspan="1">2,506,050</td>
      <td colspan="1">8.010</td>
     </tr>
     <tr>
      <td colspan="1"><strong>medium_1.fastq</strong></td>
      <td colspan="1">786,742</td>
      <td colspan="1">59,792,392</td>
      <td colspan="1">152</td>
      <td colspan="1" rowspan="2">~ 3 minutes</td>
      <td colspan="1" rowspan="2">~ 68 GB</td>
      <td colspan="1" rowspan="2">~ 0.1 hours</td>
      <td colspan="1" rowspan="2">~ 3 GB</td>
      <td colspan="1" rowspan="2">~ 0.8 minutes</td>
      <td colspan="1" rowspan="2">~ 0.6 GB</td>
      <td colspan="1" rowspan="2">~ 0.3 hours</td>
      <td colspan="1" rowspan="2">~ 5 GB</td>
      <td colspan="1" rowspan="2">8</td>
     </tr>
     <tr>
      <td colspan="1"><strong>medium_2.fastq</strong></td>
      <td colspan="1">786,742</td>
      <td colspan="1">59,792,392</td>
      <td colspan="1">152</td>
     </tr>
     <tr>
      <td colspan="1"><strong>large_1.fastq</strong></td>
      <td colspan="1">10,174,715</td>
      <td colspan="1">1,027,646,215</td>
      <td colspan="1">3,376</td>
      <td colspan="1" rowspan="2">~ 58 minutes</td>
      <td colspan="1" rowspan="2">~ 80 GB</td>
      <td colspan="1" rowspan="2">~ 5 hours</td>
      <td colspan="1" rowspan="2">~ 30 GB</td>
      <td colspan="1" rowspan="2">~ 35 minutes</td>
      <td colspan="1" rowspan="2">~ 8 GB</td>
      <td colspan="1" rowspan="2">~ 13 hours</td>
      <td colspan="1" rowspan="2">~ 30 GB</td>
      <td colspan="1" rowspan="2">8</td>
     </tr>
     <tr>
      <td colspan="1"><strong>large_2.fastq</strong></td>
      <td colspan="1">10,174,715</td>
      <td colspan="1">1,027,646,215</td>
      <td colspan="1">3,376</td>
     </tr>
     </tbody>
     </table>