Try to removed hard coded values. Seems to work for me.

build/doxygen/dolibarr-doxygen.doxyfile

@@ -114,7 +114,7 @@ FULL_PATH_NAMES = YES
 # If left blank the directory from which doxygen is run is used as the
 # path to strip.
 
-STRIP_FROM_PATH = "/media/DATA/Mes Developpements/dolibarr"
+STRIP_FROM_PATH = "../.."
 
 # The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of
 # the path mentioned in the documentation of a class, which tells

build/doxygen/hudson-doxygen.doxyfile

@@ -114,7 +114,7 @@ FULL_PATH_NAMES = YES
 # If left blank the directory from which doxygen is run is used as the
 # path to strip.
 
-STRIP_FROM_PATH = "/var/lib/jenkins/jobs/dolibarr-develop/workspace/htdocs"
+STRIP_FROM_PATH = "."
 
 # The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of
 # the path mentioned in the documentation of a class, which tells