Added GenKey0239.csv

.project

+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>ih</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>org.python.pydev.PyDevBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>org.python.pydev.pythonNature</nature>
+	</natures>
+</projectDescription>

.pydevproject

+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<?eclipse-pydev version="1.0"?><pydev_project>
+<pydev_property name="org.python.pydev.PYTHON_PROJECT_INTERPRETER">Default</pydev_property>
+<pydev_property name="org.python.pydev.PYTHON_PROJECT_VERSION">python 2.7</pydev_property>
+</pydev_project>

.settings/org.eclipse.core.resources.prefs

+eclipse.preferences.version=1
+encoding//docs/source/conf.py=utf-8

README.md

 Image Harvest Git Repo!
-Full documentation can be found on the [Project Webiste](http://cropstressgenomics.org/phenomics.php)
+Full documentation can be found on the [Project Website](http://cropstressgenomics.org/phenomics.php)

build/scripts-2.7/htpia-adaptive-threshold

+#!/usr/bin/python
+import argparse
+import traceback
+import plantcv.imgproc
+
+parser = argparse.ArgumentParser(description = "Thresholds an image based on windows.")
+parser.add_argument("--input", dest="input", help="Path to input image.", required = True)
+parser.add_argument("--value", dest="value", type=int, help="Value to write to pixels.  Usually 255 or 0.", required = True)
+parser.add_argument("--adaptiveType", dest="adaptiveType", help="Adaptive type to use.  Either 'mean' or 'gaussian'.", required = True)
+parser.add_argument("--thresholdType", dest="thresholdType", help="Threshold type to use.  Either 'binary' or 'inverse'.", required = True)
+parser.add_argument("--blockSize", dest="blockSize", type=int, help="Window size to consider.  Should be an odd number.", required = True)
+parser.add_argument("--C", dest="C", type=int, help="Constant to subtract from window mean.", required = True)
+parser.add_argument("--outputdir", dest="outputdir", default=".", help="Path to write output files, if not specified use current directory.")
+parser.add_argument("--output", default=None, dest="output", help="Name of output image to write, if not specified, use input image name.")
+args = parser.parse_args()
+
+try:
+    plant = plantcv.imgproc.Image(args.input, args.outputdir, args.output, False)
+    plant.adaptiveThreshold(args.value, args.adaptiveType, args.thresholdType, args.blockSize, args.C)
+    plant.write()
+except Exception as e:
+    print traceback.format_exc()
\ No newline at end of file

build/scripts-2.7/htpia-bitwise-and

+#!/usr/bin/python
+import argparse
+import traceback
+import plantcv.imgproc
+
+parser = argparse.ArgumentParser(description = "Converts an image between color spectrums.")
+parser.add_argument("--input1", dest="input1", help="Path to first input image.", required = True)
+parser.add_argument("--input2", dest="input2", help="Path to second input image.", required = True)
+parser.add_argument("--outputdir", dest="outputdir", default=".", help="Path to write output files, if not specified use current directory.")
+parser.add_argument("--output", default=None, dest="output", help="Name of output image to write, if not specified, use input image name.")
+args = parser.parse_args()
+
+try:
+    plant = plantcv.imgproc.Image(args.input1, args.outputdir, args.output, False)
+    plant.bitwise_and(args.input2)
+    plant.write()
+except Exception as e:
+    print traceback.format_exc()
\ No newline at end of file

build/scripts-2.7/htpia-bitwise-not

+#!/usr/bin/python
+import argparse
+import traceback
+import plantcv.imgproc
+
+parser = argparse.ArgumentParser(description = "Converts an image between color spectrums.")
+parser.add_argument("--input", dest="input", help="Path to first input image.", required = True)
+parser.add_argument("--outputdir", dest="outputdir", default=".", help="Path to write output files, if not specified use current directory.")
+parser.add_argument("--output", default=None, dest="output", help="Name of output image to write, if not specified, use input image name.")
+args = parser.parse_args()
+
+try:
+    plant = plantcv.imgproc.Image(args.input, args.outputdir, args.output, False)
+    plant.bitwise_not()
+    plant.write()
+except Exception as e:
+    print traceback.format_exc()
\ No newline at end of file