Updated check_result to match file_name instead of just checking for existence.

chipathlon/db.py

@@ -39,13 +39,13 @@ class MongoDB(object):
             print "result_id %s doesn't exist." % (result_id,)
         return
 
-    def check_result(self, control_sample_ids, experiment_sample_ids, ref_genome, result_type, params, debug=False):
+    def check_result(self, file_name, control_sample_ids, experiment_sample_ids, ref_genome, result_type, params, debug=False):
         try:
             query = {
                 "result_type": result_type,
                 "ref_genome": ref_genome,
                 "timestamp": {"$exists": True},
-                "file_name": {"$exists": True}
+                "file_name": file_name
             }
             # In the case that there are 0 samples we just want to check for existence.
             query["control_sample_ids"] = {"$all": control_sample_ids} if (len(control_sample_ids) > 0) else {"$exists": True}

chipathlon/workflow.py

@@ -265,6 +265,7 @@ class Workflow(object):
                     params[job_name] = job_arg_dict
                 result_list.append(
                     self.mdb.check_result(
+                        name,
                         outputs[name]["control_sample_ids"],
                         outputs[name]["experiment_sample_ids"],
                         ref_genome,