Split macs2 into narrow / broad peak calls.

chipathlon/jobs/params/macs2_broad.yaml

+macs2_broad:
+  inputs:
+    - name: signal_bed
+      type: file
+      file_type: bed
+
+    - name: control_bed
+      type: file
+      file_type: bed
+
+    - name: prefix
+      type: string
+  additional_inputs: null
+  outputs:
+    - name: result_peak
+      type: file
+      file_type: bed
+
+    - name: excel_result
+      type: file
+      file_type: xls
+
+    - name: result_summit
+      type: file
+      file_type: bed
+  command: macs2
+  arguments:
+    - callpeak:
+        type: string
+        changeable: false
+        required: true
+        has_value: false
+    - "-t":
+        type: file
+        changeable: false
+        required: true
+        has_value: true
+        default: $inputs.0
+    - "-c":
+        type: file
+        changeable: false
+        required: true
+        has_value: true
+        default: $inputs.1
+    - "-f":
+        type: string
+        changeable: false
+        required: true
+        has_value: true
+        default: "BED"
+    - "-n":
+        type: string
+        changeable: false
+        required: true
+        has_value: true
+        default: $inputs.2
+    - "-g":
+        type: string
+        changeable: true
+        required: false
+        has_value: true
+        default: "hs"
+    - "-p":
+        type: numeric
+        changeable: true
+        required: false
+        has_value: true
+        default: 0.01
+    - "--nomodel":
+        type: string
+        changeable: false
+        required: true
+        has_value: false
+    - "--shift":
+        type: numeric
+        changeable: true
+        required: false
+        has_value: true
+        default: 0
+    - "--extsize":
+        type: numeric
+        changeable: true
+        required: false
+        has_value: true
+        default: 110
+    - "--SPMR":
+        type: string
+        changeable: false
+        required: true
+        has_value: false
+    - "--broad":
+        type: string
+        changeable: false
+        required: true
+        has_value: false
+    - "--broad-cutoff":
+        type: numeric
+        changeable: true
+        required: true
+        has_value: true
+        default: 0.1
+  walltime: 480
+  memory: 16000
+  cores: 1
+  nodes: 1

chipathlon/jobs/params/macs2_callpeak.yaml → chipathlon/jobs/params/macs2_narrow.yaml

-macs2_callpeak:
+macs2_narrow:
   inputs:
     - name: signal_bed
       type: file
@@ -83,17 +83,12 @@ macs2_callpeak:
         required: false
         has_value: true
         default: 110
-    - "-B":
-        type: string
-        changeable: false
-        required: true
-        has_value: false
     - "--SPMR":
         type: string
         changeable: false
         required: true
         has_value: false
-  walltime: 2000
-  memory: 8000
+  walltime: 480
+  memory: 16000
   cores: 1
   nodes: 1